| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01014682001 |
| Family | PL1 |
| Protein Properties | Length: 333 Molecular Weight: 36560.2 Isoelectric Point: 4.8784 |
| Chromosome | Chromosome/Scaffold: 19 Start: 8585325 End: 8587301 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 48 | 250 | 0 |
| VPLWIVFDHDMVINLKEELIMNSYKTIDGRGFNIQIANGACITIQNVSNIIIHGVYIHGCVPTGNAIVRDRPDHYGMRGMSDGDGISIFGGTDIWIDHCT LADCYDGLIDAVYGSKSITISNNYMLNHNEAMLMGHSDDFLADKNMQVTIAFNYFGEGLVQRMPRCRHGYFHIVNNVYTDWEMYAIGGSANPTINSQGNV FIA | |||
| Full Sequence |
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| Protein Sequence Length: 333 Download |
| MLADCGVGFG RNAIGGRDGE LYVVTDSGND DPANPIPGTL RHAVIQYVPL WIVFDHDMVI 60 NLKEELIMNS YKTIDGRGFN IQIANGACIT IQNVSNIIIH GVYIHGCVPT GNAIVRDRPD 120 HYGMRGMSDG DGISIFGGTD IWIDHCTLAD CYDGLIDAVY GSKSITISNN YMLNHNEAML 180 MGHSDDFLAD KNMQVTIAFN YFGEGLVQRM PRCRHGYFHI VNNVYTDWEM YAIGGSANPT 240 INSQGNVFIA RDDNSTKEVT KRESLLGYEE WKDWNWRSDG DLMLNGAYFR ASGEEAPASY 300 SKASSMVARP ASLLTYITAS AGVLNCKIGY AC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-27 | 70 | 298 | 241 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-65 | 63 | 248 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-71 | 57 | 250 | 205 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI39737.1 | 0 | 1 | 332 | 1 | 332 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002265729.1 | 0 | 1 | 332 | 71 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002285340.1 | 0 | 2 | 332 | 74 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317359.1 | 0 | 1 | 332 | 36 | 368 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522747.1 | 0 | 1 | 332 | 67 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 324 | 21 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 324 | 21 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-17 | 52 | 249 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000002 | 73 | 248 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.0000000000001 | 131 | 225 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC952490 | 268 | 66 | 333 | 0 |
| HO778688 | 332 | 2 | 333 | 0 |
| EC942329 | 211 | 123 | 333 | 0 |
| CK262438 | 313 | 2 | 313 | 0 |
| FG606120 | 327 | 2 | 328 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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