| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01015022001 |
| Family | CE8 |
| Protein Properties | Length: 392 Molecular Weight: 43266.6 Isoelectric Point: 8.1128 |
| Chromosome | Chromosome/Scaffold: 11 Start: 521622 End: 524349 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 97 | 379 | 0 |
| KVRKDGTGDFKTITDALNSIPKGNLKRTVIWIGGGEYWEKITIDRSKPFITLYGSTADMPSITYDGTAFKYGTVDSATVAVESDYFMAVNIAFVNSAPMP DGKRVGAQAVAMRISGDKAAFHNCMFIGFQDTLCDDRGRHFFKDCQIQGTVDFIFGDGKSLYLNTMIQSVAKGVGVITAQARENVADTSGFAFVHCNISG SGDTYLGRAWRLRPRVVFAYTYMGTLINGEGWSDNLHADRDKTVYYGEYMCEGPGATPSGRVKFAKLLTGEEAKPFLSMTYIN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MRSNEIPHMI QTMCMPEKTM HLGAVTTLLL ASQFMIFIPA VVSDKTKHIP SDTSKLDAWI 60 ATNIREYRQR IWESKKGLHS SLDPILVAAE AEVNVIKVRK DGTGDFKTIT DALNSIPKGN 120 LKRTVIWIGG GEYWEKITID RSKPFITLYG STADMPSITY DGTAFKYGTV DSATVAVESD 180 YFMAVNIAFV NSAPMPDGKR VGAQAVAMRI SGDKAAFHNC MFIGFQDTLC DDRGRHFFKD 240 CQIQGTVDFI FGDGKSLYLN TMIQSVAKGV GVITAQAREN VADTSGFAFV HCNISGSGDT 300 YLGRAWRLRP RVVFAYTYMG TLINGEGWSD NLHADRDKTV YYGEYMCEGP GATPSGRVKF 360 AKLLTGEEAK PFLSMTYING NKWLLPPPNY V* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 7.0e-89 | 95 | 384 | 290 | + putative pectinesterase | ||
| PLN02671 | PLN02671 | 9.0e-91 | 95 | 384 | 299 | + pectinesterase | ||
| PLN02304 | PLN02304 | 9.0e-102 | 93 | 386 | 303 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 1.0e-113 | 95 | 386 | 300 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 19 | 390 | 374 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI27759.1 | 0 | 1 | 391 | 1 | 391 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277388.1 | 0 | 34 | 391 | 15 | 367 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277518.1 | 0 | 13 | 391 | 1 | 379 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326144.1 | 0 | 28 | 390 | 11 | 374 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516214.1 | 0 | 37 | 390 | 22 | 378 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 9.99995e-41 | 98 | 384 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 8e-40 | 94 | 384 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 4e-21 | 95 | 372 | 8 | 328 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 4e-21 | 95 | 372 | 8 | 328 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 4e-21 | 95 | 372 | 8 | 328 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
