| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01015044001 |
| Family | GH28 |
| Protein Properties | Length: 494 Molecular Weight: 55336.1 Isoelectric Point: 8.6339 |
| Chromosome | Chromosome/Scaffold: 11 Start: 690713 End: 699780 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 105 | 454 | 0 |
| GKKGGGQLNVPAGNWLTAPFNLTSHMTLFLDQDAVILGIQDEKYWPLMPPLPSYGYGREHRGARYGSLIHGQNLKDVVITGHNGTINGQGQTWWKKYRQK LLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDGIAIKSGWDQYGVAYGRPS VNILIRNLVIRSMVSAGVSIGSEMSGGVSNVTVENLLVWNSRRAVRIKTSPGRGGYVQHINYRNLTFDNVRVGIVIKTDYNEHPDDGFDPKALPILEDIS FTGVHGQGVRVPVRIHGSEEIPVKKVTFRDMSVGITYKKKHIFQCAYVEG | |||
| Full Sequence |
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| Protein Sequence Length: 494 Download |
| MVETASFGRF HFNHHRPDLK RWIPAFLSSH RTLFTILWIA AFASVFVWQR NIVEGLLTFR 60 RAPARPLPRL RPAVYNLTDF GGVGDSVTVN TEAFERAISA ISKLGKKGGG QLNVPAGNWL 120 TAPFNLTSHM TLFLDQDAVI LGIQDEKYWP LMPPLPSYGY GREHRGARYG SLIHGQNLKD 180 VVITGHNGTI NGQGQTWWKK YRQKLLNHTR GPLVQIMWSS DIVISNITLR DSPFWTLHPY 240 DCKNVTIKNV TILAPIFEAP NTDGIDPDSC EDMVIEDCYI SVGDDGIAIK SGWDQYGVAY 300 GRPSVNILIR NLVIRSMVSA GVSIGSEMSG GVSNVTVENL LVWNSRRAVR IKTSPGRGGY 360 VQHINYRNLT FDNVRVGIVI KTDYNEHPDD GFDPKALPIL EDISFTGVHG QGVRVPVRIH 420 GSEEIPVKKV TFRDMSVGIT YKKKHIFQCA YVEGRVIGTV FPAPCENLDR YDEQEQLIKH 480 SKSQNVTDID YDF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-22 | 75 | 454 | 390 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-28 | 33 | 465 | 451 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 7.0e-32 | 76 | 437 | 372 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-37 | 173 | 452 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-64 | 74 | 395 | 347 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 1 | 493 | 1 | 509 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 1 | 493 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 1 | 493 | 1 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 1 | 493 | 1 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 1 | 493 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 50 | 434 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 50 | 434 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 50 | 434 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 50 | 434 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-19 | 119 | 437 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778855 | 449 | 1 | 449 | 0 |
| FN769574 | 320 | 149 | 468 | 0 |
| FE707848 | 301 | 76 | 376 | 0 |
| FG528363 | 284 | 198 | 481 | 0 |
| JK989090 | 297 | 198 | 494 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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