| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01015290001 |
| Family | CE8 |
| Protein Properties | Length: 314 Molecular Weight: 34103.8 Isoelectric Point: 8.6497 |
| Chromosome | Chromosome/Scaffold: 11 Start: 2434577 End: 2437702 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 16 | 306 | 0 |
| TVNKNSAAGDFRSIQDAIDSLPSINLVRVVIKVHAGVYTEKVNIPAFKSFITIEGAGADKTVVQWGDTARTIGEKGQPIGTFNSATFAVNSLYFIAKNIT FKNTTPVPAPGAVGKQAVAFRISGDTAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSLLEDTGFS FVNCKVTGSGALFLGRAWGPFSRVVFAYTYMDDIIIPKGWYNWGDPSREMTVFYGQYKCTGPGAAFAGRVSWSRELTDQEAKPFISLSYID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 314 Download |
| MFKAAKNKLF PSYAITVNKN SAAGDFRSIQ DAIDSLPSIN LVRVVIKVHA GVYTEKVNIP 60 AFKSFITIEG AGADKTVVQW GDTARTIGEK GQPIGTFNSA TFAVNSLYFI AKNITFKNTT 120 PVPAPGAVGK QAVAFRISGD TAAFLGCKFL GAQDTLYDHL GRHYYKDCYI EGSVDFIFGN 180 ALSLFEGCHV HAIAQNTGAL TAQGRSSLLE DTGFSFVNCK VTGSGALFLG RAWGPFSRVV 240 FAYTYMDDII IPKGWYNWGD PSREMTVFYG QYKCTGPGAA FAGRVSWSRE LTDQEAKPFI 300 SLSYIDGSEW IKM* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 1.0e-118 | 11 | 312 | 302 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 9.0e-119 | 15 | 312 | 306 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 5.0e-122 | 15 | 311 | 298 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-123 | 15 | 311 | 299 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 0 | 1 | 313 | 313 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN63186.1 | 0 | 1 | 313 | 67 | 379 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI27989.1 | 0 | 1 | 313 | 1 | 313 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197474.1 | 0 | 1 | 313 | 71 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330522.1 | 0 | 1 | 313 | 69 | 381 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514210.1 | 0 | 1 | 313 | 71 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 23 | 312 | 16 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 5.60519e-45 | 24 | 312 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 3e-27 | 13 | 299 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 7e-22 | 12 | 299 | 3 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 7e-22 | 12 | 299 | 3 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT759916 | 273 | 42 | 314 | 0 |
| EE105585 | 249 | 30 | 278 | 0 |
| DT748463 | 246 | 69 | 314 | 0 |
| EH701256 | 260 | 31 | 290 | 0 |
| EC944569 | 217 | 98 | 314 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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