y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01015852001 |
Family | CE8 |
Protein Properties | Length: 398 Molecular Weight: 43580.3 Isoelectric Point: 7.017 |
Chromosome | Chromosome/Scaffold: 3 Start: 18407105 End: 18409640 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 97 | 388 | 0 |
CVDRNGCCNFTMVQSAVDAVSVLSQKRTIIWINSGVYYEKVIIPKNKPNITFQGQGFASTAIVWNDTANSSHGTFYSGSVQVFAANFIAKNISFMNVAPI PKPGDVGAQAVAIRVAGDQAAFWGCGFFGSQDTLHDDRGRHYFRDCYIQGSIDFIFGDARSFYENCQLISMANPVPVGSKVINGAITAHGRTSMDENTGY AFVACTVGGTGRVWLGRAWRPFSRVVFAYTSLSDIIASEGWNDFNDPTRDQSIFYGEYMCKGPGANTSTRVPYAQKLNDTQASIFLNVSFID |
Full Sequence |
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Protein Sequence Length: 398 Download |
MSLKAISLPL LFAIFASLAM YTHLSLPNNP KFVKHLIDLS LKTFSSSPFV STPMVYSALD 60 CGLHRHKHHQ DSTTGSLCDD FPPDFPPPDT NTTSILCVDR NGCCNFTMVQ SAVDAVSVLS 120 QKRTIIWINS GVYYEKVIIP KNKPNITFQG QGFASTAIVW NDTANSSHGT FYSGSVQVFA 180 ANFIAKNISF MNVAPIPKPG DVGAQAVAIR VAGDQAAFWG CGFFGSQDTL HDDRGRHYFR 240 DCYIQGSIDF IFGDARSFYE NCQLISMANP VPVGSKVING AITAHGRTSM DENTGYAFVA 300 CTVGGTGRVW LGRAWRPFSR VVFAYTSLSD IIASEGWNDF NDPTRDQSIF YGEYMCKGPG 360 ANTSTRVPYA QKLNDTQASI FLNVSFIDAD QWLQPYA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 7.0e-95 | 92 | 394 | 304 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-100 | 36 | 395 | 368 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-111 | 95 | 395 | 302 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-121 | 96 | 395 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 20 | 397 | 378 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 1 | 394 | 1 | 388 | Pectinesterase [Medicago truncatula] |
EMBL | CAN73254.1 | 0 | 1 | 353 | 1 | 353 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267842.1 | 0 | 1 | 397 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323171.1 | 0 | 20 | 396 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 28 | 396 | 28 | 394 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 96 | 394 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-39 | 97 | 394 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-16 | 125 | 381 | 36 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-16 | 125 | 381 | 36 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-16 | 125 | 381 | 36 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |