| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01016208001 |
| Family | PL1 |
| Protein Properties | Length: 497 Molecular Weight: 53897.8 Isoelectric Point: 6.15 |
| Chromosome | Chromosome/Scaffold: 13 Start: 6603765 End: 6608482 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 132 | 339 | 0 |
| AVIQTQPLWITFSTNMLIKLKYELIVNSFKTIDGRGANVHITGRGCMTLQYVSNVIIHGVHVHHCVPSGNADIRSSPTHVGWRGKSDGDGISIFGSRKIW IDHCSLSYCRDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDKYSPDSGMQVTIAFNHFGEGLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSANPTIN SQGNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 497 Download |
| MLPNTCILLL CLLCSLSPLI RATLNLNLTL PHQHPNPEVV VDEVQRRLNV SISRRQVLSV 60 QENDGSSCLT GNPVDDCWRC DPNWQNNRQR LADCGIGFGL DAMGGKGGQF YVVTDSSDED 120 PINPAPGTLR HAVIQTQPLW ITFSTNMLIK LKYELIVNSF KTIDGRGANV HITGRGCMTL 180 QYVSNVIIHG VHVHHCVPSG NADIRSSPTH VGWRGKSDGD GISIFGSRKI WIDHCSLSYC 240 RDGLIDAIMG STGITISNNY FSHHDEVMLL GHDDKYSPDS GMQVTIAFNH FGEGLVQRMP 300 RCRRGYIHVV NNDFTQWEMY AIGGSANPTI NSQGNRYTAP GDINAKEVTK RVETDEEDWA 360 EWNWRTEGDV MVNGAFFVPS GVGLSTQYAK ASSVEPKSAA LIQQLTMNAG ALSGSRDDSM 420 GVSYPGFSSG GTSSSISNNG GHGSSDDPDY FGMIFGSGSG SGAPPPPSVT IPMFFSLLII 480 LILYVTINHG GVLLFL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-24 | 104 | 391 | 317 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-62 | 152 | 337 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-69 | 146 | 341 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196051.2 | 0 | 6 | 489 | 18 | 514 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265853.1 | 0 | 1 | 415 | 115 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002268818.1 | 0 | 1 | 465 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 2 | 416 | 3 | 415 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 2 | 467 | 4 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 72 | 413 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 72 | 413 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-17 | 103 | 346 | 22 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 155 | 361 | 128 | 354 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.00000000000003 | 212 | 411 | 138 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
