| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01016209001 |
| Family | PL1 |
| Protein Properties | Length: 417 Molecular Weight: 45570.5 Isoelectric Point: 6.5611 |
| Chromosome | Chromosome/Scaffold: 13 Start: 6593309 End: 6603253 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 131 | 314 | 0 |
| WIIFSSDMLIKLKRELIVNSYKTIDGRGANVQITGGGCIGLKYVTNVIIHNIQLHHCVPSESDGDGISIMGSRYIWIDHCSLSYCKDGLIDATLGSTAIT LSNNYFSHHDKVMLLGRSDGDEMDDGMQVTVAFNRFGEALEQRMPRCRRGYFHVVNNDYTQWGIYAIGGSASPTINSQGNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 417 Download |
| MLRNTHIVFI CLLGCLCPVI TATDLPHQHP NPEAVVLQVQ RRLNASLARR GLLGVHENDQ 60 VSCLTGNPID DCWRCDPNWE ADRQHLAECG IGFGQQAVGG KGGQVYVVTD HSDSGNPGSL 120 RYAVTKPEPL WIIFSSDMLI KLKRELIVNS YKTIDGRGAN VQITGGGCIG LKYVTNVIIH 180 NIQLHHCVPS ESDGDGISIM GSRYIWIDHC SLSYCKDGLI DATLGSTAIT LSNNYFSHHD 240 KVMLLGRSDG DEMDDGMQVT VAFNRFGEAL EQRMPRCRRG YFHVVNNDYT QWGIYAIGGS 300 ASPTINSQGN RYTAPPSTNA KEVTRRMDAK DGDWARWNWR TEGDIMVNGA YFVPSGDGLG 360 AQFAMASSVE PKSAGFIDQL TMNAGALPPT SVVGSIPNGQ VPNSIPNILD WFFKKN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.0008 | 149 | 242 | 101 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 2.0e-32 | 143 | 310 | 180 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-63 | 143 | 312 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-77 | 137 | 316 | 192 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI31414.1 | 0 | 1 | 416 | 1 | 416 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002265853.1 | 0 | 1 | 387 | 115 | 525 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002268818.1 | 0 | 25 | 387 | 30 | 412 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272786.1 | 0 | 1 | 407 | 1 | 407 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 2 | 387 | 3 | 411 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 67 | 387 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 67 | 387 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-21 | 95 | 312 | 19 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 6e-17 | 153 | 324 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 1vbl_A | 8e-17 | 146 | 313 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
