y
Basic Information | |
---|---|
Species | Vitis vinifera |
Cazyme ID | GSVIVT01017279001 |
Family | GH28 |
Protein Properties | Length: 442 Molecular Weight: 48126.4 Isoelectric Point: 8.7886 |
Chromosome | Chromosome/Scaffold: 9 Start: 6285866 End: 6293560 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 76 | 408 | 0 |
IACASITKASIVIPHDKKFLVRPISFGGPCRAKVTVTISGTIIAPKDPDVWHGLNPQKWLYFHGVNHLTVRGSGIINGRGHKWWSQSCKINATNPCEHAP TAIIFHRCKKLRVRDIALINSQRTHIAFTNSFRIVVSGIKMIAPASSPNTDGLHISSSSRVNIKDSIIRTGDDCISIVGNSSIIRIKNIACGPGHGISVG SLGMGNSWAQVHDVIVDQAFLAHTKNGLRIKTWQGGRGFASQITFQNVLMENVSHPIIIDQYYCDSLTPCLNQTLAVKVANISYVSIKGTSATEESVRFA CSDSFPCEKLYLEEVQLLSYTGKNTSSFCWEAQ |
Full Sequence |
---|
Protein Sequence Length: 442 Download |
MLTQEVMKSL CLICTVFIFL VLFLINVEGF EPLIQLPHSP AARPRLETKI LYVNQFGAKG 60 DGVQDDTDAF RNAWKIACAS ITKASIVIPH DKKFLVRPIS FGGPCRAKVT VTISGTIIAP 120 KDPDVWHGLN PQKWLYFHGV NHLTVRGSGI INGRGHKWWS QSCKINATNP CEHAPTAIIF 180 HRCKKLRVRD IALINSQRTH IAFTNSFRIV VSGIKMIAPA SSPNTDGLHI SSSSRVNIKD 240 SIIRTGDDCI SIVGNSSIIR IKNIACGPGH GISVGSLGMG NSWAQVHDVI VDQAFLAHTK 300 NGLRIKTWQG GRGFASQITF QNVLMENVSH PIIIDQYYCD SLTPCLNQTL AVKVANISYV 360 SIKGTSATEE SVRFACSDSF PCEKLYLEEV QLLSYTGKNT SSFCWEAQGL TSGSVDPPAC 420 FSSNGTFIGQ KADSGSALQS F* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-89 | 53 | 420 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-92 | 53 | 427 | 377 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-95 | 78 | 404 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-111 | 53 | 417 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 7 | 441 | 437 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABM67700.1 | 0 | 7 | 441 | 1 | 445 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 1 | 441 | 1 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002281827.1 | 0 | 7 | 441 | 1 | 435 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 15 | 434 | 15 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 24 | 436 | 5 | 420 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 145 | 338 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 9e-18 | 77 | 378 | 17 | 318 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 5e-17 | 143 | 404 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-17 | 143 | 404 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-17 | 143 | 404 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |