| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01017302001 |
| Family | GH28 |
| Protein Properties | Length: 392 Molecular Weight: 42319.1 Isoelectric Point: 7.5848 |
| Chromosome | Chromosome/Scaffold: 9 Start: 6501025 End: 6504291 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 378 | 0 |
| QAGYVNFIIESGKAFLLKPIRFEGPCRASYINIQVLGTITAPKSIYEWGGQSVDNWLIFFRINGLIVNGKGTINGQGSIWWQQLPKNNLFHPLDALSFVG CNNLKLDHLNLINSPRRHVVIFNINGATISNLNIIAPKESPNTDGIDIGQSTNIQLHYCNIKTGDDCIAIGPSSFYINISNIACGPGHGISIGSLGLNGR TDKVEEVQVRDCTFTGTRNGVRIKTWEGGSGYARKILFEGITLNAADNPIIIDQYYCPNNMCSKQSTSGVKLSDISFTRVIGTTTTKNAINLSCSKSVAC TNILLNHVNIKSAYSEDVVSSYCINAHGR | |||
| Full Sequence |
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| Protein Sequence Length: 392 Download |
| MASIGLGKIG LSDDDELSTI NVRDFGAIGD GTTDDSQAFL KAWKKACGIQ AGYVNFIIES 60 GKAFLLKPIR FEGPCRASYI NIQVLGTITA PKSIYEWGGQ SVDNWLIFFR INGLIVNGKG 120 TINGQGSIWW QQLPKNNLFH PLDALSFVGC NNLKLDHLNL INSPRRHVVI FNINGATISN 180 LNIIAPKESP NTDGIDIGQS TNIQLHYCNI KTGDDCIAIG PSSFYINISN IACGPGHGIS 240 IGSLGLNGRT DKVEEVQVRD CTFTGTRNGV RIKTWEGGSG YARKILFEGI TLNAADNPII 300 IDQYYCPNNM CSKQSTSGVK LSDISFTRVI GTTTTKNAIN LSCSKSVACT NILLNHVNIK 360 SAYSEDVVSS YCINAHGRFS DSVPPVDCLL N* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-88 | 18 | 385 | 374 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 2.0e-95 | 19 | 388 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-103 | 21 | 391 | 371 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-109 | 22 | 389 | 372 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-110 | 18 | 389 | 376 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62658.1 | 0 | 1 | 390 | 38 | 434 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36306.1 | 0 | 1 | 390 | 107 | 494 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36306.1 | 0.0000001 | 317 | 386 | 22 | 90 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0 | 1 | 390 | 1 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266960.1 | 0 | 1 | 391 | 1 | 391 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 90 | 361 | 85 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-21 | 96 | 359 | 57 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-21 | 96 | 359 | 57 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-21 | 96 | 359 | 57 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-21 | 96 | 359 | 57 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX192293 | 254 | 52 | 305 | 0 |
| CV536748 | 260 | 86 | 343 | 0 |
| EL454770 | 278 | 18 | 285 | 0 |
| DY961682 | 280 | 3 | 275 | 0 |
| EY474520 | 246 | 144 | 389 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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