| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01017304001 |
| Family | GH28 |
| Protein Properties | Length: 373 Molecular Weight: 39485 Isoelectric Point: 5.2709 |
| Chromosome | Chromosome/Scaffold: 9 Start: 6539501 End: 6541529 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 24 | 357 | 0 |
| TCKAQSPDATMNIPAKTFLVNPAKFWGPCVPTRINIQVAGQIIANTDQSLYSNNYWLHFAYLGGLTLTGSGTIDGQGAGSWPERKGVAIWHVLGQALQLF SITDLEINGLTHTNPQKAHISMTGCNGVNINNITISAPEDSPNTDGIDIGDSSHIQIQNSKIGTGDDCIAIGTNCSFINITDVTCGPGHGISIGSLGNPV DGGYDTVSEIHVRSCDFIGKNTTGVRIKTWQGGHGEVKNITYEYIKFYDIARPIVIDQFYCPNNACQNNTGTSAVAISDVSYTNMGGTSSGDDPAISLRC GDKNSCNNIVLDNVHIKNSDSTKPASADCLNVKG | |||
| Full Sequence |
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| Protein Sequence Length: 373 Download |
| MDYGAVGDGK TDDSQAFLKA WNETCKAQSP DATMNIPAKT FLVNPAKFWG PCVPTRINIQ 60 VAGQIIANTD QSLYSNNYWL HFAYLGGLTL TGSGTIDGQG AGSWPERKGV AIWHVLGQAL 120 QLFSITDLEI NGLTHTNPQK AHISMTGCNG VNINNITISA PEDSPNTDGI DIGDSSHIQI 180 QNSKIGTGDD CIAIGTNCSF INITDVTCGP GHGISIGSLG NPVDGGYDTV SEIHVRSCDF 240 IGKNTTGVRI KTWQGGHGEV KNITYEYIKF YDIARPIVID QFYCPNNACQ NNTGTSAVAI 300 SDVSYTNMGG TSSGDDPAIS LRCGDKNSCN NIVLDNVHIK NSDSTKPASA DCLNVKGISS 360 HVKPSLLNCM GS* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02793 | PLN02793 | 3.0e-70 | 2 | 360 | 371 | + Probable polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 2.0e-72 | 25 | 356 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN03003 | PLN03003 | 9.0e-81 | 3 | 366 | 369 | + Probable polygalacturonase At3g15720 |
| PLN02188 | PLN02188 | 1.0e-83 | 3 | 356 | 359 | + polygalacturonase/glycoside hydrolase family protein |
| PLN03010 | PLN03010 | 2.0e-88 | 1 | 360 | 364 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62657.1 | 0 | 1 | 317 | 1 | 310 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI33426.1 | 0 | 1 | 372 | 1 | 371 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36305.1 | 0 | 1 | 372 | 1 | 372 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266839.1 | 0 | 1 | 361 | 397 | 750 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266839.1 | 0 | 1 | 372 | 79 | 386 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 7e-19 | 88 | 352 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-19 | 88 | 352 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-19 | 88 | 352 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-19 | 88 | 352 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 7e-19 | 88 | 352 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR556291 | 243 | 121 | 361 | 0 |
| DR546551 | 236 | 127 | 361 | 0 |
| CA785641 | 199 | 142 | 339 | 0 |
| FS942787 | 311 | 72 | 368 | 0 |
| DW479564 | 330 | 5 | 320 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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