| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01017305001 |
| Family | GH28 |
| Protein Properties | Length: 496 Molecular Weight: 53338.9 Isoelectric Point: 8.1655 |
| Chromosome | Chromosome/Scaffold: 9 Start: 6544703 End: 6553874 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 148 | 482 | 0 |
| NAVCTARTTSAMLIIQRKKTFLLSPTVFSGPCKPPQIHVLVLGDITAPKTRSAWGRSSYWLIFQYIDGFIINGKGTLDGQGSSWWPSLYYKQELLNDTNS YALGFSFCNNLQIYGLNVINSPSKHVKLFRCNGAILSNLNIKAPKESPNTDGIVIGECSQIQVHDNNIGTGDDCVAILKGSSNINISRVACGPGHGISIG SLGMNGAYDTVEEIHVQDCSFTGTQNGIRIKTWQGGSGYARKISFQGITLNAAENPIIIDQYYCPQLHCPNKTSAVKVSDISYAGVQGTSMTKTAINLRC SQSMACTNIELKRINITSVGQKFVTSSFCLNAHGR | |||
| Full Sequence |
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| Protein Sequence Length: 496 Download |
| MALIFPTQLT FTFMTLPLEL KSAVQISDVS FTGFWGTSAT DDAIKLSCIE TVGCANITVD 60 DISIKSASGN GETYSCINAH GTVNKTFPPL TYAMQDFSIL ICLILSMASS GSSNVALNGR 120 TTTFNVLDFG AIGDGVTDDS QAFLKAWNAV CTARTTSAML IIQRKKTFLL SPTVFSGPCK 180 PPQIHVLVLG DITAPKTRSA WGRSSYWLIF QYIDGFIING KGTLDGQGSS WWPSLYYKQE 240 LLNDTNSYAL GFSFCNNLQI YGLNVINSPS KHVKLFRCNG AILSNLNIKA PKESPNTDGI 300 VIGECSQIQV HDNNIGTGDD CVAILKGSSN INISRVACGP GHGISIGSLG MNGAYDTVEE 360 IHVQDCSFTG TQNGIRIKTW QGGSGYARKI SFQGITLNAA ENPIIIDQYY CPQLHCPNKT 420 SAVKVSDISY AGVQGTSMTK TAINLRCSQS MACTNIELKR INITSVGQKF VTSSFCLNAH 480 GRASRSIPNL RCLMK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-5 | 22 | 90 | 72 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-6 | 22 | 81 | 60 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 6.0e-100 | 124 | 493 | 378 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-104 | 124 | 464 | 344 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-110 | 121 | 493 | 378 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62658.1 | 0.0000005 | 22 | 95 | 361 | 435 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN62658.1 | 0 | 92 | 495 | 23 | 435 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36306.1 | 0 | 1 | 495 | 1 | 495 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0.000002 | 22 | 95 | 300 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0 | 107 | 495 | 1 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-23 | 218 | 465 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 7e-19 | 223 | 464 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 7e-19 | 223 | 464 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 7e-19 | 223 | 464 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 7e-19 | 223 | 464 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB913712 | 128 | 369 | 496 | 0 |
| CV536748 | 262 | 190 | 447 | 0 |
| DR923379 | 217 | 278 | 493 | 0 |
| CB913712 | 81 | 22 | 101 | 0.00000001 |
| DR923379 | 70 | 22 | 90 | 0.0001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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