| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01017644001 |
| Family | GH28 |
| Protein Properties | Length: 376 Molecular Weight: 40558.9 Isoelectric Point: 4.5885 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2340665 End: 2343191 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 6 | 332 | 0 |
| AACAVESGIVLVPADHVFMITSTIFSGPCKPGLVFQVDGVLMPPNGPDCWPKSDSKKQWLVFYRLDQMTFTGSGTIEGNGGDWWELPCKPHRGPNGSTLP GPCDSPALIRFFMSSNLVVSSLRIQNSPQFHMKFDGCEGVLIEKLSISSPKLSPNTDGIHIENTKSVGIYNSEIGNGDDCISIGRGCSDVNIEGVTCGPS HGISIGSLGVQNSQACVSNITVRNVFIKDSDNGVRIKTWQGGTGSVSGISFENIQMENVRNCMIIDQYYCLSKACRNQTSAVYLTDVTYRNIKGTYDVRS PPIHFACSDTVACTNITMSEVELLPAE | |||
| Full Sequence |
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| Protein Sequence Length: 376 Download |
| MEAWKAACAV ESGIVLVPAD HVFMITSTIF SGPCKPGLVF QVDGVLMPPN GPDCWPKSDS 60 KKQWLVFYRL DQMTFTGSGT IEGNGGDWWE LPCKPHRGPN GSTLPGPCDS PALIRFFMSS 120 NLVVSSLRIQ NSPQFHMKFD GCEGVLIEKL SISSPKLSPN TDGIHIENTK SVGIYNSEIG 180 NGDDCISIGR GCSDVNIEGV TCGPSHGISI GSLGVQNSQA CVSNITVRNV FIKDSDNGVR 240 IKTWQGGTGS VSGISFENIQ MENVRNCMII DQYYCLSKAC RNQTSAVYLT DVTYRNIKGT 300 YDVRSPPIHF ACSDTVACTN ITMSEVELLP AEGELVDDPF CWNAYGTQET LTIPPITCLQ 360 DGMPESLAES SSYGC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-66 | 1 | 360 | 368 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-68 | 1 | 355 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-82 | 3 | 328 | 332 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-89 | 15 | 328 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-103 | 2 | 361 | 363 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK95305.1 | 0 | 1 | 375 | 100 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| EMBL | CBI25976.1 | 0 | 1 | 375 | 1 | 375 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263668.1 | 0 | 1 | 375 | 103 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 2 | 375 | 109 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 8 | 375 | 113 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-23 | 77 | 274 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-22 | 62 | 328 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-22 | 62 | 328 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-22 | 62 | 328 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-22 | 62 | 328 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479564 | 307 | 2 | 308 | 0 |
| CX663441 | 286 | 91 | 376 | 0 |
| GR169315 | 262 | 62 | 323 | 0 |
| EC956137 | 239 | 138 | 376 | 0 |
| ES849368 | 311 | 27 | 334 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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