| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01018823001 |
| Family | CE8 |
| Protein Properties | Length: 365 Molecular Weight: 39874.8 Isoelectric Point: 9.1068 |
| Chromosome | Chromosome/Scaffold: 4 Start: 19585929 End: 19587433 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 66 | 356 | 0 |
| KVDKDQSLGHFASVQKAVDSLPVNNPCRVVISIGAGIYREKVVIPAIKAYVSLEGAGADKTIIEWNDTADLVGQTGRPLGTFGSATFAVNSPYFIAKNIT FQNKAPPPPSGALGKQAVALRISADTAAFIGCKFIGAQDTLYDHMGRHYFRDCYIQGSVDFIFGNGLSLYEGCHLHAITNSVGALTAQKRDGLLEETGFS FVHCKVTGSGALYLGRAWGTFSRVVFAFTFMDKIINPSGWYAWGNKSREMTVFYGQYQCSGPGADFGRRVSWSRELTQQEAKPFISIGFVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 365 Download |
| MAMMMPKLLL LIFLLASASS TLNADGSNEL VMTEEAYRSW VKRVGSFKHS VFQKAKNKLK 60 PCLTIKVDKD QSLGHFASVQ KAVDSLPVNN PCRVVISIGA GIYREKVVIP AIKAYVSLEG 120 AGADKTIIEW NDTADLVGQT GRPLGTFGSA TFAVNSPYFI AKNITFQNKA PPPPSGALGK 180 QAVALRISAD TAAFIGCKFI GAQDTLYDHM GRHYFRDCYI QGSVDFIFGN GLSLYEGCHL 240 HAITNSVGAL TAQKRDGLLE ETGFSFVHCK VTGSGALYLG RAWGTFSRVV FAFTFMDKII 300 NPSGWYAWGN KSREMTVFYG QYQCSGPGAD FGRRVSWSRE LTQQEAKPFI SIGFVDGYEW 360 LTNL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 9.0e-110 | 76 | 361 | 294 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 4.0e-115 | 59 | 361 | 303 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-117 | 64 | 361 | 300 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 2.0e-118 | 74 | 362 | 290 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 0 | 23 | 363 | 341 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI17409.1 | 0 | 1 | 364 | 1 | 364 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266952.1 | 0 | 3 | 364 | 1 | 362 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310842.1 | 0 | 37 | 363 | 13 | 338 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514210.1 | 0 | 8 | 361 | 11 | 381 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| RefSeq | XP_002531506.1 | 0 | 21 | 361 | 22 | 364 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 74 | 361 | 17 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1.00053e-42 | 74 | 361 | 13 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 6e-28 | 75 | 349 | 43 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 3e-18 | 67 | 349 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 3e-18 | 67 | 349 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
