| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01019405001 |
| Family | GH28 |
| Protein Properties | Length: 434 Molecular Weight: 46830 Isoelectric Point: 4.8847 |
| Chromosome | Chromosome/Scaffold: 2 Start: 377928 End: 380101 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 83 | 353 | 0 |
| ASDGGSQLFVPPGRWLTGSFNLTSHFTLYLHKDAVLLASQDEHEWPVIDPLPSYGRGRDTQGGRYISLIFGTNLTDVVITGENGTIDGQGALWWAKFHKG ELKYTRPYLIEIMHSDNVQISSLTLVNSPSWNVHPVYSSNVIIQGLTITAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIAYGMPTK QLVIRRLTCISPFSATIALGSEMSGGIEDVRAEDILAIDTESGVRIKTAGINYRDMVAENVTMAGRLEGIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 434 Download |
| MELSKSLRTA RVVGVVSVVV VLVLLSTNGA ESRKHWVFDY FEYSAINCRA HSASLTDFGG 60 VGDGTTSNTK AFQAAIDHLS QFASDGGSQL FVPPGRWLTG SFNLTSHFTL YLHKDAVLLA 120 SQDEHEWPVI DPLPSYGRGR DTQGGRYISL IFGTNLTDVV ITGENGTIDG QGALWWAKFH 180 KGELKYTRPY LIEIMHSDNV QISSLTLVNS PSWNVHPVYS SNVIIQGLTI TAPVTSPNTD 240 GINPDSCTNT RIEDCYIVSG DDCIAVKSGW DEYGIAYGMP TKQLVIRRLT CISPFSATIA 300 LGSEMSGGIE DVRAEDILAI DTESGVRIKT AGINYRDMVA ENVTMAGRLE GISGDPFTGI 360 CISNVTIGLA KKAKKAPWTC TDIAGITSGV VPQPCDLLPD QGPEKIVACN FPTDSLPIDT 420 VEVQTCSYWG KYL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-20 | 52 | 343 | 312 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 2.0e-20 | 58 | 345 | 300 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-26 | 33 | 342 | 322 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-29 | 151 | 366 | 235 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-53 | 53 | 347 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI34379.1 | 0 | 1 | 433 | 1 | 433 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002278930.1 | 0 | 1 | 433 | 1 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 1 | 432 | 1 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301370.1 | 0 | 24 | 433 | 14 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 1 | 433 | 1 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-40 | 51 | 344 | 26 | 352 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-40 | 51 | 344 | 26 | 352 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-40 | 51 | 344 | 26 | 352 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-40 | 51 | 344 | 26 | 352 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000001 | 69 | 343 | 26 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
