| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01019516001 |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 48592.6 Isoelectric Point: 8.1563 |
| Chromosome | Chromosome/Scaffold: 2 Start: 1253052 End: 1258570 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 421 | 0 |
| RGGTLLYIPPGVYLTESFNLTSHMTLYLSKDAVIRATQDTGSWPLIAPLPSYGRGRELPGGRYMSFIHADGVHDVIITGENGTIDGQGEVWWNMWRQRTL QFTRPNLIELINSRNIIISNVIFRDSPFWNIHPVYCRNVVVQFVTILAPHDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGI TIRRITGSSPFAGIAVGSETSGGVQNVFAEHINLYNMGVGIHLKTNIGRGGVIRNITVSNVYMEKARTGIKIAGDVGDHPDDNFNPNALPVVKGVVIRDV WGLDVLQPGSIIGLKNSPFTGICLSKINLHGKIKPGTAPWKCSDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MCRFVVWIFL CFAATALFLT RLVLAGDVTC SGIVPMRHRN DVISIKDFGG VGDGKTLNTK 60 AFRAAIYRIE HLRRRGGTLL YIPPGVYLTE SFNLTSHMTL YLSKDAVIRA TQDTGSWPLI 120 APLPSYGRGR ELPGGRYMSF IHADGVHDVI ITGENGTIDG QGEVWWNMWR QRTLQFTRPN 180 LIELINSRNI IISNVIFRDS PFWNIHPVYC RNVVVQFVTI LAPHDSPNTD GIDPDSSSNV 240 CIEDSYISTG DDLVAVKSGW DEYGIAYGRP SSGITIRRIT GSSPFAGIAV GSETSGGVQN 300 VFAEHINLYN MGVGIHLKTN IGRGGVIRNI TVSNVYMEKA RTGIKIAGDV GDHPDDNFNP 360 NALPVVKGVV IRDVWGLDVL QPGSIIGLKN SPFTGICLSK INLHGKIKPG TAPWKCSDVS 420 GAAVGVSPWP CSELTSPGQT GSCSSFI* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-19 | 30 | 346 | 325 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-20 | 40 | 346 | 311 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 8.0e-26 | 43 | 419 | 387 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-26 | 156 | 419 | 270 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-51 | 23 | 369 | 377 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 1 | 445 | 1 | 442 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 1 | 447 | 1 | 447 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 1 | 445 | 1 | 442 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 36 | 444 | 1 | 409 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 11 | 447 | 12 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-38 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-38 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-38 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-38 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-18 | 86 | 338 | 51 | 302 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
