| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01020067001 |
| Family | PL1 |
| Protein Properties | Length: 444 Molecular Weight: 49930.3 Isoelectric Point: 10.1572 |
| Chromosome | Chromosome/Scaffold: 1 Start: 10846297 End: 10848235 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 159 | 357 | 0 |
| IVFGRSMIIKLKQELMVTSDKTIDGRGVNVHIAYGAGITIQFARNVIIHGLHIHDIVSRPGGLIRDSVHHFGLRTRSDGDGISIFGSSHVWIDHNSMSKC EDGLVDAIQGSTAITISNNHFTKHNETMLLGASDGYSGDIIMQVTVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAVGGSAHPTIVSQGNRYVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 444 Download |
| MAAPKSNSLL LLFVVMFMVV VPTIRAHIAE YDDYWKAREK EAKTVAIDAF DPSPEDVNDD 60 FNKNVEKSIF GKNGTRRNLK VNKGPCKATN PIDRCWRCRR NWAMDRRRLA DCVLGFGRRT 120 VGGKHGRLYI VTDPSDNDML NPKPGTLRYA VIQPQPLWIV FGRSMIIKLK QELMVTSDKT 180 IDGRGVNVHI AYGAGITIQF ARNVIIHGLH IHDIVSRPGG LIRDSVHHFG LRTRSDGDGI 240 SIFGSSHVWI DHNSMSKCED GLVDAIQGST AITISNNHFT KHNETMLLGA SDGYSGDIIM 300 QVTVAFNHFG RGLIQRMPRC RWGFFHVVNN DYTHWNMYAV GGSAHPTIVS QGNRYVAAPL 360 MDPKHDAKEV TKRDHATKAE WSKWTWRSEG DLMVNGAFFV QSGVPFKKKP FSRYDMIKAK 420 PGKFVPRLTR YSGALTCWRT SPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 1.0e-19 | 27 | 79 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 7.0e-27 | 170 | 353 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-57 | 170 | 355 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-68 | 165 | 359 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69904.1 | 0 | 1 | 443 | 1 | 443 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN79927.1 | 0 | 1 | 443 | 1 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 19 | 443 | 48 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002270089.1 | 0 | 1 | 443 | 1 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002270112.1 | 0 | 1 | 443 | 1 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 90 | 436 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 90 | 436 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-21 | 120 | 346 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000002 | 168 | 363 | 121 | 338 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000000002 | 168 | 373 | 71 | 296 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
