| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01020328001 |
| Family | GH28 |
| Protein Properties | Length: 91 Molecular Weight: 10108.5 Isoelectric Point: 8.0754 |
| Chromosome | Chromosome/Scaffold: 19 Start: 21281602 End: 21282410 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 2 | 90 | 4.1e-27 |
| GSLGKYSNEEPVVGISVKNCTFTNTQNGVRVKTWPASHQGTAFEMHFEDIAMNNVGNPIIIDQEYCPHNQCNLKIPSRIKLNNVSFRNI | |||
| Full Sequence |
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| Protein Sequence Length: 91 Download |
| MGSLGKYSNE EPVVGISVKN CTFTNTQNGV RVKTWPASHQ GTAFEMHFED IAMNNVGNPI 60 IIDQEYCPHN QCNLKIPSRI KLNNVSFRNI * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 9.0e-17 | 1 | 90 | 90 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-19 | 1 | 90 | 90 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-19 | 1 | 90 | 90 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-30 | 1 | 90 | 90 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-32 | 1 | 90 | 91 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI21720.1 | 0 | 1 | 90 | 1 | 90 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI22049.1 | 0 | 1 | 90 | 186 | 275 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002282563.1 | 0 | 1 | 90 | 246 | 335 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 1 | 90 | 246 | 335 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 1 | 90 | 246 | 335 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.005 | 13 | 86 | 262 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EC944002 | 90 | 1 | 90 | 3.9937e-43 |
| HS262336 | 90 | 1 | 90 | 1.99965e-42 |
| HS017114 | 90 | 1 | 90 | 1.99965e-42 |
| CU617665 | 90 | 1 | 90 | 4.99983e-42 |
| CU533490 | 90 | 1 | 90 | 9.99967e-42 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Citrus sinensis | orange1.1g047946m | ||||
| Glycine max | Glyma14g23621.1 | ||||
| Malus domestica | MDP0000284808 | ||||
| Populus trichocarpa | Potri.012G013600.1 | ||||
| Prunus persica | ppa012438m | ppa026186m | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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