| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01020329001 |
| Family | GH28 |
| Protein Properties | Length: 193 Molecular Weight: 21630.9 Isoelectric Point: 10.0944 |
| Chromosome | Chromosome/Scaffold: 19 Start: 21265508 End: 21281525 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 23 | 170 | 4.4e-31 |
| CGNACASPMASTVMIPEGTYALGQITIGGPCKAPINFIVQGTMKAPVDTSRFKAEAGWIAFQQIDQFTLFGGGVFYGQGKTVWGRKSPRSAYCNQLPINL RFNFITNSMVNDITSRDSKQFHINLLGCKNLTFYNIAISAPEESLNTD | |||
| Full Sequence |
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| Protein Sequence Length: 193 Download |
| MARTDKNIEV VILSRCVALL KACGNACASP MASTVMIPEG TYALGQITIG GPCKAPINFI 60 VQGTMKAPVD TSRFKAEAGW IAFQQIDQFT LFGGGVFYGQ GKTVWGRKSP RSAYCNQLPI 120 NLRFNFITNS MVNDITSRDS KQFHINLLGC KNLTFYNIAI SAPEESLNTD RWKSHWTFLR 180 DQYHRFNHRN RR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-19 | 26 | 170 | 150 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-22 | 18 | 170 | 158 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-26 | 18 | 170 | 154 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-35 | 18 | 170 | 154 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-37 | 27 | 170 | 144 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI21721.1 | 0 | 1 | 192 | 1 | 192 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI22050.1 | 0 | 2 | 170 | 35 | 198 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI28390.1 | 0 | 18 | 170 | 46 | 198 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269648.1 | 0 | 18 | 170 | 15 | 167 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002274125.1 | 0 | 18 | 170 | 46 | 198 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC987202 | 153 | 18 | 170 | 0 |
| EC941822 | 153 | 18 | 170 | 0 |
| DT010865 | 153 | 18 | 170 | 0 |
| GW837750 | 115 | 18 | 132 | 0 |
| CO121861 | 155 | 17 | 170 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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