| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01020794001 |
| Family | GH28 |
| Protein Properties | Length: 1081 Molecular Weight: 118506 Isoelectric Point: 5.2902 |
| Chromosome | Chromosome/Scaffold: 12 Start: 1905862 End: 1915894 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 383 | 0 |
| GDACSSPVASTVMIPDGTYALGQIIIAGPCKAPINFVVQGTVMAPVDTSRFRAEAGWITFQQIDQFTLSGDGVFDGQGKIVWGTKCLSSAYCNQLPINLR FNFITNSMVKDITSRDSKQFHINLLGCKNLTFYNIVISAPQESLNTDGIHIGRSSGINITDSTIETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGK YPNEEPVVGISVKNCTLTNTQNGVRVKTWPASHQGTASEMHFEDIVMNNVGNPIIIDQEYCPHNQCNLKSPSRIKISNVSFRNIRGTTSTQVAVKLICSQ GVPCHDVELGDINLEYNGNEGPAMSQCKNIKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1081 Download |
| MGLKLNIATT SLLLLLASAA EVSGDIIFDV TKYGARTDGN SDISQALLKA WGDACSSPVA 60 STVMIPDGTY ALGQIIIAGP CKAPINFVVQ GTVMAPVDTS RFRAEAGWIT FQQIDQFTLS 120 GDGVFDGQGK IVWGTKCLSS AYCNQLPINL RFNFITNSMV KDITSRDSKQ FHINLLGCKN 180 LTFYNIVISA PQESLNTDGI HIGRSSGINI TDSTIETGDD CVSIGDGSEQ INIQRVTCGP 240 GHGISVGSLG KYPNEEPVVG ISVKNCTLTN TQNGVRVKTW PASHQGTASE MHFEDIVMNN 300 VGNPIIIDQE YCPHNQCNLK SPSRIKISNV SFRNIRGTTS TQVAVKLICS QGVPCHDVEL 360 GDINLEYNGN EGPAMSQCKN IKPNLLGVQL PRISMGISRI LGCLLGCHIL FIPFSLPVNA 420 LTAYDSAANL SSSWINNGSR DIGVDSEDYS TLRPIFLGQG INASFACGFY CNYNCEGYLF 480 AILIFPPARI HNFLEVQDPK VVWSANQNFL VRDDATLQLT QDGDLILRDA DGTFVWSSNT 540 SGKSVVGLNL TEIGNLVLFD SNNASVWQSF DHPTDSLVPG QILVFDQKLT ASASNKDWSQ 600 GLISFFITNY SVVALIGSHN YFFHSHGYHN GTESRYVIFR KEGLLFPSAQ PVFSFPGPFS 660 AQYMKLEPKG YLTFYGFFND IWKVLFNPLL GDFNCAYPMI CGKYGVCSEQ QCFCPGPTAG 720 ETRYFTPVND EEPDLGCKEI TPLSCNASHY QSLLMLRSTV SALILPNKFE IFNKKESDIE 780 SCKQACLSNC SCKAAVFWSS HGACYLLSEI FSLMKDAHPP GLTTFIKLLS PFGAFVGLVF 840 IVIMIGRYLI LKGKDVKEDG EDKDLLQVPG MPTRFSHEIL IVATENFSRE LGKGGFGSVF 900 EGILTDGTKV AVKCINGLSQ TKDYFLAEVE TIGGIHHLNL VRLVGYCANK SNRCLVYEYI 960 NLDHSQPEED KYLLSLFKRK AEEDQMLDLV DKYSEDMQLH GEEAVELMRL AAWCLQNDNG 1020 RRPSMSMVIK VLEGVIDVED NLDYNFFNSS GLGATEAVHR REINVGFASP VLPSILSGPR 1080 * 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-82 | 30 | 394 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-86 | 27 | 369 | 349 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-94 | 22 | 391 | 370 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-124 | 55 | 382 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-136 | 23 | 392 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0004672 | protein kinase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22052.1 | 0 | 1 | 1080 | 1 | 1080 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002278230.1 | 0 | 423 | 960 | 5 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002278230.1 | 0 | 961 | 1080 | 696 | 815 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282563.1 | 0 | 1 | 393 | 1 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 1 | 393 | 1 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 1e-16 | 16 | 365 | 9 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 4e-16 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-16 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-16 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-16 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
