| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01021583001 |
| Family | CBM43 |
| Protein Properties | Length: 723 Molecular Weight: 79726.6 Isoelectric Point: 6.5957 |
| Chromosome | Chromosome/Scaffold: 10 Start: 7424996 End: 7435560 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 602 | 685 | 3.7e-34 |
| WCVALPGVSQVDLQNALDWACGLGMADCGAIQAGGACFEPDTLVSHASYAFNSYYQQNGNSDIACNFGGTATLSKKDPSYGKCS | |||
| Full Sequence |
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| Protein Sequence Length: 723 Download |
| MPSSIGSPPD ESIFVTIVRG LGRARMVRQM IKVLDLITKF GENPSLKIFN SILDVLVKED 60 IDLAREFYRK KMMMNGVSGD DYTFGILMKG LCLTNRIGDA FKLLQVMKSR GKTPNTVIYN 120 TMIHALCKNG KVGRARSLMN EMVEPSDVTF NVLISAYCQE ENLVQALVLL EKSFSMGFVP 180 DVVTATKVVG ILCKAGRVTE GVEVLERVES MGGVVDVVAY NTLIKGFCML GKAKVGHRVL 240 KDMEIKGCLP NVDTYNILAS GYCDSGMLDS AIDLFNDMKT DGINWNFMTY DTLIRGLCSG 300 GRMEDGFKIL ELMEESRGGA GGRISPYNSI IYGLYKKNQF EEALEFLTKM EKLFPRAVDR 360 SLRILGFCNE GSIGDAKRVY DQMIKEGGVP SVLVYVCLIH GFCQDGNVRE AFELINEMVD 420 HGYFPTAPTF NALISAFCGQ GKVGSALKLM EDMVGRGCLP DMGSYSPMVD ALCNKGDFQK 480 AVRLFLQMVE KDILPDYSTW NSMLLCLTQE TVWLEGDNLF HLTAYRERLC YKKKKAGFNV 540 LAIYHMSTMR KKIWIFQSLL LLECYLVSTM EGVVQEKAEA ALPITTLSPP EGNTTFLDGT 600 NWCVALPGVS QVDLQNALDW ACGLGMADCG AIQAGGACFE PDTLVSHASY AFNSYYQQNG 660 NSDIACNFGG TATLSKKDPS YGKCSYSTSG SLNSSKSPLS KYKPSFTWWA LGAILLLLCL 720 RI* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03218 | PLN03218 | 2.0e-5 | 5 | 227 | 255 | + maturation of RBCL 1; Provisional | ||
| PLN03218 | PLN03218 | 8.0e-17 | 192 | 506 | 354 | + maturation of RBCL 1; Provisional | ||
| PLN03218 | PLN03218 | 1.0e-20 | 83 | 403 | 368 | + maturation of RBCL 1; Provisional | ||
| PLN03218 | PLN03218 | 3.0e-27 | 96 | 509 | 427 | + maturation of RBCL 1; Provisional | ||
| smart00768 | X8 | 7.0e-43 | 602 | 684 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30973.1 | 0 | 1 | 722 | 1 | 722 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274224.1 | 0 | 1 | 522 | 173 | 694 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002274224.1 | 6e-23 | 100 | 504 | 127 | 606 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002521729.1 | 0 | 1 | 527 | 98 | 624 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| RefSeq | XP_002521729.1 | 0.000000000000005 | 289 | 504 | 74 | 321 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 3e-24 | 601 | 691 | 12 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 4g26_A | 0.0004 | 319 | 488 | 1 | 166 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 4g25_A | 0.0004 | 319 | 488 | 1 | 166 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 4g24_A | 0.0004 | 319 | 488 | 1 | 166 | A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn |
| PDB | 4g23_A | 0.0004 | 319 | 488 | 1 | 166 | A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CK247238 | 224 | 1 | 224 | 0 |
| DT039619 | 201 | 523 | 723 | 0 |
| DT019261 | 201 | 523 | 723 | 0 |
| CK247238 | 264 | 245 | 504 | 2e-21 |
| CK247238 | 253 | 110 | 352 | 0.0000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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