| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01023861001 |
| Family | GH28 |
| Protein Properties | Length: 389 Molecular Weight: 41777.7 Isoelectric Point: 8.5842 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2918806 End: 2921293 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 267 | 377 | 8.4e-30 |
| IWIKTWANSPDSSEATNMTFENIVMNNVTNPIIIDQAYCPFMSCASKAPSRVKLSDIYFKNIRGTSLSAVAVTLKCSRGTPCQNIYLQDVHLDLSSGEKH ATSSCRNVRVK | |||
| GH28 | 76 | 261 | 3.36312e-44 |
| WKEACASTGKVKLLIPKGTYMIGPITFAGPCNSVSSLTGYLKATTDLSEYGFSAGWIEFGWMKGLTLTGGGTFDGQGVEAWPYNKCPINANCKLLPTNLK FIAMNKTVVRGITSVNSKFFHIALVECNNFKGSQIKISAPENSPNTDGIHIERSSGVYFSRSLIGTGDDCISVGQGNSQVTITSIT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 389 Download |
| MGTDIIGIKL LYVLSFFFCV NGRGLGLASS GANGVQMLER SPAELKGANT HLFNVRSFGA 60 QADGHTDDRR AFTAAWKEAC ASTGKVKLLI PKGTYMIGPI TFAGPCNSVS SLTGYLKATT 120 DLSEYGFSAG WIEFGWMKGL TLTGGGTFDG QGVEAWPYNK CPINANCKLL PTNLKFIAMN 180 KTVVRGITSV NSKFFHIALV ECNNFKGSQI KISAPENSPN TDGIHIERSS GVYFSRSLIG 240 TGDDCISVGQ GNSQVTITSI TSVIFDIWIK TWANSPDSSE ATNMTFENIV MNNVTNPIII 300 DQAYCPFMSC ASKAPSRVKL SDIYFKNIRG TSLSAVAVTL KCSRGTPCQN IYLQDVHLDL 360 SSGEKHATSS CRNVRVKYSG TQIPPPCA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 7.0e-63 | 50 | 387 | 372 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-66 | 54 | 384 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-68 | 2 | 387 | 427 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-70 | 80 | 379 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 6 | 388 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16789.1 | 0 | 71 | 387 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI37725.1 | 0 | 1 | 388 | 1 | 388 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_193552.1 | 0 | 41 | 387 | 19 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279959.1 | 0 | 1 | 388 | 1 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 0 | 17 | 388 | 8 | 410 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000004 | 144 | 377 | 115 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 0.0000002 | 54 | 253 | 29 | 270 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.0000002 | 54 | 253 | 29 | 270 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.0000002 | 54 | 253 | 29 | 270 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.0000002 | 54 | 253 | 29 | 270 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
