| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01024049001 |
| Family | GH10 |
| Protein Properties | Length: 626 Molecular Weight: 70552.8 Isoelectric Point: 5.5699 |
| Chromosome | Chromosome/Scaffold: 3 Start: 1497503 End: 1500305 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 280 | 544 | 0 |
| VSKDFPFGSAIAKTILGNLPYQNWFVKRFNAAVFENELKWYATEPDPGNITYALADQMLEFVRANQIVARGHNIFWEDPKYTPAWVRNLSGPALQSAVNN RIQSLMSKYKDEFVHWDVSNEMLHFDFYEQRLGPDATLHFYETAHESDPLATLFMNDFNVVETCSDVNSTVDAYISRLRELSRGGATMSGIGLEGHFTIP NPPLIRAILDKLATLQLPIWLTEIDISNTLSKETQAVYLEQVLREGFSHPSVNGIMLWTALHSYG | |||
| Full Sequence |
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| Protein Sequence Length: 626 Download |
| MRFELYPSLY SHEGLPYCLA CEQGTGLLRT CTISLLQGLS RDQEHDVWSA LLLPASLLPC 60 RPSISCSLWY HLSLSHPHWF QYLMLMGVFS FFDLVSNTAD GPLYDFSAYT QCKTRAEGPL 120 YNGGILKGAR WDIPRVLADG VYSPAFVLRN LTTGTKYCFS SWVKIKGADS APIRASLMSE 180 KKTINCVGTV TARRGCWSFL KGGFVLDEPL DYSLLFFQNS DERAVDLAIT SASLQPFTDQ 240 EWSTNQQYII NTERKRAVTI HVANTQGERL QGAEITVDQV SKDFPFGSAI AKTILGNLPY 300 QNWFVKRFNA AVFENELKWY ATEPDPGNIT YALADQMLEF VRANQIVARG HNIFWEDPKY 360 TPAWVRNLSG PALQSAVNNR IQSLMSKYKD EFVHWDVSNE MLHFDFYEQR LGPDATLHFY 420 ETAHESDPLA TLFMNDFNVV ETCSDVNSTV DAYISRLREL SRGGATMSGI GLEGHFTIPN 480 PPLIRAILDK LATLQLPIWL TEIDISNTLS KETQAVYLEQ VLREGFSHPS VNGIMLWTAL 540 HSYGCYQMCL TDNNFHNLPA GDVVDKILKE WQTGEIGGQT DDHGSYSFFG FLGEYQVTVR 600 YGNRTANSTF SLCRGDETRH FSIQL* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 7.0e-39 | 282 | 506 | 240 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-58 | 281 | 537 | 273 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-74 | 317 | 564 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94921.1 | 0 | 78 | 625 | 7 | 558 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| EMBL | CBI37893.1 | 0 | 1 | 625 | 1 | 625 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195577.2 | 0 | 96 | 625 | 26 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277675.1 | 0 | 100 | 625 | 24 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534153.1 | 0 | 158 | 625 | 6 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v6y_A | 2e-27 | 286 | 543 | 16 | 281 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 1nq6_A | 2e-27 | 286 | 564 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 9e-27 | 286 | 505 | 16 | 239 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 9e-27 | 286 | 505 | 16 | 239 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 9e-27 | 286 | 505 | 16 | 239 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES803339 | 253 | 271 | 523 | 0 |
| CX705541 | 238 | 389 | 626 | 0 |
| GR953916 | 292 | 260 | 551 | 0 |
| DY024035 | 263 | 340 | 599 | 0 |
| EL361489 | 267 | 322 | 587 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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