| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01024239001 |
| Family | PL1 |
| Protein Properties | Length: 321 Molecular Weight: 36103.9 Isoelectric Point: 8.9923 |
| Chromosome | Chromosome/Scaffold: 16 Start: 133174 End: 134689 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 42 | 240 | 0 |
| ITFKQSMRIKLEKPLLISSFTTIDGRGASIHIAGGACLLLHEVTNVIIHGIRIHHCRAQMPGQVLGPDSKMMELGHVDGDAIRLVASSQIWIDHNTLYEC QDGLLDVTRGSTDITISNNWFRNHDKVMLLGHDDEYLQDKNMKVTVAFNHFGPNCYQRMPRVRHGYTHVVNNLYLGWEQYAIGGSMNPSVLSEANLFIA | |||
| Full Sequence |
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| Protein Sequence Length: 321 Download |
| MTNNIGTDLI RYEVTDPSDH PLNPKPGTLR FGATNIKGKV WITFKQSMRI KLEKPLLISS 60 FTTIDGRGAS IHIAGGACLL LHEVTNVIIH GIRIHHCRAQ MPGQVLGPDS KMMELGHVDG 120 DAIRLVASSQ IWIDHNTLYE CQDGLLDVTR GSTDITISNN WFRNHDKVML LGHDDEYLQD 180 KNMKVTVAFN HFGPNCYQRM PRVRHGYTHV VNNLYLGWEQ YAIGGSMNPS VLSEANLFIA 240 PESGTKEVTW RQDNNENGRS WNFQSVRDVF ENGAHFSQTG DSAKRPHYNH LQTFRVADAK 300 AVRPITRSSG ALRCRKRSRC * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.002 | 57 | 168 | 114 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 8.0e-31 | 58 | 262 | 237 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-60 | 60 | 238 | 188 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-72 | 49 | 241 | 202 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 320 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 320 | 50 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 320 | 32 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 320 | 32 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 248 | 60 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 12 | 312 | 41 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 12 | 312 | 41 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-20 | 45 | 238 | 121 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 6e-18 | 38 | 238 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 3zsc_A | 2e-17 | 34 | 240 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 224 | 92 | 314 | 0 |
| FD757999 | 215 | 54 | 268 | 0 |
| FG474249 | 199 | 125 | 321 | 0 |
| FG478648 | 199 | 125 | 321 | 0 |
| DR808308 | 226 | 1 | 219 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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