| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01025431001 |
| Family | CBM43 |
| Protein Properties | Length: 529 Molecular Weight: 56230.8 Isoelectric Point: 6.3405 |
| Chromosome | Chromosome/Scaffold: 6 Start: 847758 End: 858488 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 218 | 299 | 4.9e-32 |
| CVAKEGADSDDLEKGLNWACGQSQVNCTAIQEGQPCYSPNTYQNHASYAYNDYYQKMRSGGGTCDFRGTATTTTADPSYGSC | |||
| GH17 | 26 | 144 | 5.9e-37 |
| VGVNIGTDVSNLPSASVLVGILKAHQITHVRLYDADAHMLNALANTGIEVVVGVTNEEVLGIGQSPSTAATWINRNVAAYVPSTNITAIAVGSEVLTSIP HAAPVLVPAMNYLHKALML | |||
| Full Sequence |
|---|
| Protein Sequence Length: 529 Download |
| MMPEKWLAIV LLLLVGMFCN ALGAFVGVNI GTDVSNLPSA SVLVGILKAH QITHVRLYDA 60 DAHMLNALAN TGIEVVVGVT NEEVLGIGQS PSTAATWINR NVAAYVPSTN ITAIAVGSEV 120 LTSIPHAAPV LVPAMNYLHK ALMLQFLKNT NSYFIMLDAM VDAAYYSVQA FNFSVVPVRS 180 GPVSERNWGV FLTNGTAVYP LSWSTSLQAT GNSSTVFCVA KEGADSDDLE KGLNWACGQS 240 QVNCTAIQEG QPCYSPNTYQ NHASYAYNDY YQKMRSGGGT CDFRGTATTT TADPSYGSCI 300 FSGSSNSSSS GGTSPSSAFA PESLSSRSPT LQVPRLGVLI PAMLLILISL RGMSMNSSVS 360 GVGGSGSGGG GRCWPSTTSV SASGKRIQKE MMELNADPPD DCSAGPKGDN LYHWVSTLIG 420 PSGTPYEGGI FFLDITFPSD YPFKPPKVVF KTRIYHCNVD SAGNLSVDIL KDSWSPALTI 480 SNVLLAIRSI FTKPDPYNAL VPGIAHLYLA DRSKHDEVAT EWTLRFAR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00212 | UBCc | 4.0e-53 | 386 | 527 | 144 | + Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. | ||
| pfam00179 | UQ_con | 6.0e-56 | 386 | 523 | 139 | + Ubiquitin-conjugating enzyme. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. | ||
| cd00195 | UBCc | 3.0e-56 | 385 | 523 | 140 | + Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. | ||
| COG5078 | COG5078 | 3.0e-56 | 379 | 527 | 150 | + Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | ||
| PLN00172 | PLN00172 | 2.0e-58 | 385 | 527 | 143 | + ubiquitin conjugating enzyme; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016881 | acid-amino acid ligase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN72077.1 | 0 | 1 | 304 | 1 | 448 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI16509.1 | 0 | 1 | 528 | 1 | 528 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_187965.1 | 0 | 1 | 323 | 1 | 468 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002283548.1 | 0 | 1 | 528 | 1 | 676 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002532062.1 | 0 | 15 | 348 | 15 | 434 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1y6l_C | 0 | 381 | 527 | 2 | 148 | A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 |
| PDB | 1y6l_B | 0 | 381 | 527 | 2 | 148 | A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 |
| PDB | 1y6l_A | 0 | 381 | 527 | 2 | 148 | A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 |
| PDB | 3bzh_A | 0 | 380 | 527 | 46 | 193 | A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 |
| PDB | 2ayv_A | 0 | 385 | 527 | 24 | 166 | A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii |
