| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01025593001 |
| Family | PL1 |
| Protein Properties | Length: 330 Molecular Weight: 36845.8 Isoelectric Point: 7.5442 |
| Chromosome | Chromosome/Scaffold: 8 Start: 13772721 End: 13779581 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 62 | 240 | 0 |
| VFEVSGIIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRASTDITISRC HFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 330 Download |
| MSCLPYAHVD SNLRALAGQA EGFGRLAIGG LHGPLYHVTT LADDGPGSLR DGCRKKEPLW 60 IVFEVSGIIH LSSYLNVSSY KTIDGRGQRI KLTGKGLRLK ECEHVIICNL EFEGGRGPDV 120 DGIQIKPNSK HIWIDRCSLR DFDDGLIDIT RASTDITISR CHFSQHDKTM LIGADPSHTG 180 DRCIRVTIHH CFFDGTRQRH PRVRYGKVHL YNNYTRNWGI YAVCASVESQ IYSQCNIYEA 240 GHKKVAFKYL TEKAADKEEE RTGCLRSEGD LFINGTQAGL MTVASEMFHP REFYPTWTVE 300 APSDALKQVL HHCTGWQCVP RPADEAAIA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-40 | 56 | 236 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 6.0e-48 | 29 | 309 | 300 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 5.0e-70 | 75 | 241 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 2 | 329 | 56 | 385 | unknown [Populus trichocarpa] |
| EMBL | CAN80964.1 | 0 | 1 | 329 | 45 | 422 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI32661.1 | 0 | 1 | 329 | 1 | 329 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277576.1 | 0 | 1 | 329 | 45 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323433.1 | 0 | 2 | 329 | 3 | 332 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 4.99983e-42 | 10 | 275 | 15 | 306 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 4.99983e-42 | 10 | 275 | 15 | 306 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-26 | 28 | 319 | 22 | 332 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 4e-26 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 5e-21 | 82 | 313 | 82 | 320 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY275282 | 326 | 1 | 324 | 0 |
| DY289690 | 306 | 4 | 304 | 0 |
| DY271752 | 268 | 4 | 271 | 0 |
| DY978143 | 278 | 4 | 281 | 0 |
| DY271752 | 29 | 271 | 297 | 0.61 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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