| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01026477001 |
| Family | GH28 |
| Protein Properties | Length: 529 Molecular Weight: 57701.9 Isoelectric Point: 6.8875 |
| Chromosome | Chromosome/Scaffold: 4 Start: 22947573 End: 22951180 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 108 | 450 | 0 |
| NIGGSQLNVPRGRWVTGSFNLTSNFTLFLEEGAVILGSQDLEDWPIIEPLPSYGRGRERLGGRHISLIHGDALANVVITGQNGTIDGQGKMWWELWWNRT LEHTRGHLLEIKNSHNILISNLTFMNSPFWTIHPVYCSNVVIKDVTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIAMARPSSN IIVRRLSGTTPTCSGVGIGSEMSGGISNVTMEDLHIWDSAAGVRIKTDKGRGGYVVNITINNIRMERVKVPIRFSRGSNDHPDDGWDPKAVPKIKGIFIS NVVSLNSTKAPLLEGIEGAPYEGICMKNVTLLGLAPAAKWHCE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 529 Download |
| MDSEKAWFGA AMGGFTRPSW AFLLLVFIVL VVSCFQIGTK TVFPRWVVLG GGETGISEEA 60 PSCFGLFREV PPRKVVMSIR DFGGVGDGVT SNTETFRRAI RYMQSFGNIG GSQLNVPRGR 120 WVTGSFNLTS NFTLFLEEGA VILGSQDLED WPIIEPLPSY GRGRERLGGR HISLIHGDAL 180 ANVVITGQNG TIDGQGKMWW ELWWNRTLEH TRGHLLEIKN SHNILISNLT FMNSPFWTIH 240 PVYCSNVVIK DVTILAPLNA PNTDGIDPDS STNVCIEDCY IESGDDLVAV KSGWDQYGIA 300 MARPSSNIIV RRLSGTTPTC SGVGIGSEMS GGISNVTMED LHIWDSAAGV RIKTDKGRGG 360 YVVNITINNI RMERVKVPIR FSRGSNDHPD DGWDPKAVPK IKGIFISNVV SLNSTKAPLL 420 EGIEGAPYEG ICMKNVTLLG LAPAAKWHCE FVSGFTDAVF PVSCPQMQSN VSSSWCLDHL 480 GNLQIDSSRK SSRKSVTLGM AMGQSQQNPE LIRELTPTHP NLPTKGMV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-22 | 189 | 379 | 199 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-27 | 77 | 440 | 384 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-28 | 77 | 474 | 419 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-33 | 175 | 452 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-59 | 76 | 418 | 381 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 12 | 479 | 1 | 468 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 1 | 528 | 1 | 528 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 1 | 488 | 1 | 488 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 53 | 476 | 10 | 434 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 55 | 476 | 53 | 477 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.00001e-41 | 69 | 440 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.00001e-41 | 69 | 440 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.00001e-41 | 69 | 440 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.00001e-41 | 69 | 440 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-22 | 121 | 438 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
