| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01026985001 |
| Family | GH28 |
| Protein Properties | Length: 380 Molecular Weight: 41256.9 Isoelectric Point: 6.1589 |
| Chromosome | Chromosome/Scaffold: 15 Start: 18819105 End: 18821478 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 80 | 300 | 0 |
| SEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGK LKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYDWHRER RLYMVAENVSMAARLEGIPSD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 380 Download |
| MCKSPLTTQV VSVLVAVVLL LSVSRGECRK GRILEALEYS AISCRAHSAS LVDFGGVGDG 60 QTLNTKAFQD AVSELSKYGS EGGAQLYVPA GKWLTGSFSL TSHFTLFLHR DAVLLASQDI 120 SQWPVIKPLP SYGRGRDAAA GRYTSLIFGT NLTDVIITGD NGTIDGQGGL WWQRFHGGKL 180 KYTRPYLIEL MYSADIQISN LTLLNSPSWN VHPVYSRNIL IQGITILAPV RSPNTDGINP 240 DSCTNTRIED CYIVSGDDCV AVKSGWDEYG IAYDWHRERR LYMVAENVSM AARLEGIPSD 300 PFTGICISNV TIHLAAKAKK VPWTCTDVEG ISSGVTPTPC STLPDQGPEK TSLCNFPAES 360 LPIDTVELQK CSYGINYYP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 8.0e-16 | 50 | 265 | 225 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-18 | 29 | 265 | 254 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-19 | 84 | 265 | 187 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 9.0e-21 | 46 | 265 | 227 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 4.0e-40 | 49 | 287 | 264 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 25 | 379 | 39 | 491 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | ABE66001.1 | 0 | 13 | 371 | 10 | 414 | glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] |
| EMBL | CBI34379.1 | 0 | 27 | 373 | 31 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI40426.1 | 0 | 1 | 379 | 1 | 379 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277736.1 | 0 | 1 | 379 | 3 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9e-27 | 47 | 270 | 26 | 273 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9e-27 | 47 | 270 | 26 | 273 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9e-27 | 47 | 270 | 26 | 273 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9e-27 | 47 | 270 | 26 | 273 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000001 | 93 | 287 | 52 | 245 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
