| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01028044001 |
| Family | GH28 |
| Protein Properties | Length: 427 Molecular Weight: 46338.6 Isoelectric Point: 6.4953 |
| Chromosome | Chromosome/Scaffold: 7 Start: 3392426 End: 3394784 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 70 | 402 | 0 |
| AACHWRGTSTVLIPEGKFLVGQATFEGPCNSPNPIVFEARGTVLAQPDLSEYPSPEWLMFEDVNQLILKGGGTFDGQGVFAWKYNDCHQNADCQMLPTNL KFNKVNNSVVQDITSLDSKSFHYFITNSYNFTAFNLTITAPGNSPNTDGMHLSRCDLVNLSNFTIKTGDDCISVGQGSTNINITNVYCGPGHGLSIGSLG KYPNEKDVVGIHVTNCTLNGTTNGARIKTWPGSPPSQASSIIFQDIVMNSVKNPILIDQKYGSHTGKPSRVKVSDVLYKNLRGTTISKVAVSLVCSELVP CNGLQLEDIDFTYNGPATFKENLPFSSTCLHAN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 427 Download |
| MAMTIRFVAK AVILLGLALI SCNAQGDPLR DDLRRLLADT GATVFDVTKY GAVADGKTDN 60 VEAFMKTWLA ACHWRGTSTV LIPEGKFLVG QATFEGPCNS PNPIVFEARG TVLAQPDLSE 120 YPSPEWLMFE DVNQLILKGG GTFDGQGVFA WKYNDCHQNA DCQMLPTNLK FNKVNNSVVQ 180 DITSLDSKSF HYFITNSYNF TAFNLTITAP GNSPNTDGMH LSRCDLVNLS NFTIKTGDDC 240 ISVGQGSTNI NITNVYCGPG HGLSIGSLGK YPNEKDVVGI HVTNCTLNGT TNGARIKTWP 300 GSPPSQASSI IFQDIVMNSV KNPILIDQKY GSHTGKPSRV KVSDVLYKNL RGTTISKVAV 360 SLVCSELVPC NGLQLEDIDF TYNGPATFKE NLPFSSTCLH ANASYVGKQN PPACAYEFIF 420 FIFHDH* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-80 | 43 | 379 | 346 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-84 | 40 | 414 | 380 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-90 | 44 | 414 | 382 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-105 | 72 | 398 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-136 | 41 | 415 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 1 | 409 | 1 | 421 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36886.1 | 0 | 1 | 426 | 1 | 426 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268540.1 | 0 | 1 | 415 | 1 | 411 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 1 | 414 | 1 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 8 | 414 | 3 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-18 | 139 | 354 | 115 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 8e-16 | 46 | 378 | 22 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00000000000002 | 215 | 398 | 152 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000002 | 215 | 398 | 152 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000002 | 215 | 398 | 152 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
