Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01028057001 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 51520.3 Isoelectric Point: 5.7319 |
Chromosome | Chromosome/Scaffold: 7 Start: 3495915 End: 3498855 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 93 | 438 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLERGATILGSQDFTHWEILDPLPSYGRGIELPGGRYRSLINGPNLSDVVITGNNGTIDGQGSVWWENFSSHS LNYSRPHIVEFISSNDIIISNLTFLNSPAWNIHPVYCSNVWVQNITAYAPPESPRTSGVVPDSSEYICIEDSNISMGYDAIVLKSGWDEYGIAYGKPTRN VHIRRVWLQSSSGSGLAFGSEMSGGISDILVEHIHLQDSSTGIKLKTTKGRGGYIKGILISDVEMENVGLTIGATGQCRSHPDDKYDPGALPVVDGITFK DMVGTNVSIAGNFSGIYESPFTSICLFNISLSITSNSSKPWLCSNV |
Full Sequence |
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Protein Sequence Length: 478 Download |
MFCSVLLEIK GCVCLCSLHS SNLICVALLL LLALSCAVEH NGVGNDGQCK YKKSLEPRPH 60 SVSILEFGAV GDGKTSNTIA FENAIFYLKS FADKGGAQLY VPPGRWLTGS FNLTSHLTLF 120 LERGATILGS QDFTHWEILD PLPSYGRGIE LPGGRYRSLI NGPNLSDVVI TGNNGTIDGQ 180 GSVWWENFSS HSLNYSRPHI VEFISSNDII ISNLTFLNSP AWNIHPVYCS NVWVQNITAY 240 APPESPRTSG VVPDSSEYIC IEDSNISMGY DAIVLKSGWD EYGIAYGKPT RNVHIRRVWL 300 QSSSGSGLAF GSEMSGGISD ILVEHIHLQD SSTGIKLKTT KGRGGYIKGI LISDVEMENV 360 GLTIGATGQC RSHPDDKYDP GALPVVDGIT FKDMVGTNVS IAGNFSGIYE SPFTSICLFN 420 ISLSITSNSS KPWLCSNVFG SSECVSPEPC PNLQTKTSNS FSTCSSFPYT NTLATVL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-18 | 48 | 450 | 431 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-23 | 60 | 447 | 406 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-26 | 160 | 438 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-26 | 59 | 360 | 320 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 2.0e-46 | 62 | 377 | 346 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 35 | 451 | 12 | 428 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 1 | 477 | 1 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269037.1 | 0 | 24 | 477 | 89 | 542 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 35 | 451 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516982.1 | 0 | 35 | 472 | 12 | 447 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-34 | 60 | 418 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-34 | 60 | 418 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-34 | 60 | 418 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-34 | 60 | 418 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-17 | 106 | 394 | 52 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |