| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01028132001 |
| Family | GH28 |
| Protein Properties | Length: 303 Molecular Weight: 33041.3 Isoelectric Point: 8.5762 |
| Chromosome | Chromosome/Scaffold: 7 Start: 4057889 End: 4060032 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 301 | 0 |
| SAACAVKNATIKIPSKFRLLISPITLQGPCEPGLVLQIDGMIVAPGGPRMWLKPELLQWINFKNLHDFVIQGRGTINGQGSAWWWITPRILQNQLTNRNS RYDDTMKPTAVRFYSSLNLTIRDIQIQNSPRCHLKFDNCAGVKVTNLSISSPGDSPNTDGIHLQNSQRVEVENSTISCGDDCISIQTGCSDVNIQNIKCG PGHGIRHG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 303 Download |
| MSNNGVPNPI HYWLLSIQIF LFSSSALNAR TAHGWGTKHQ NPIKGGSHNL GHGSSSSSVY 60 DSYQPYSPIF DVPSFGARGD GVSDDSKAFQ VTWSAACAVK NATIKIPSKF RLLISPITLQ 120 GPCEPGLVLQ IDGMIVAPGG PRMWLKPELL QWINFKNLHD FVIQGRGTIN GQGSAWWWIT 180 PRILQNQLTN RNSRYDDTMK PTAVRFYSSL NLTIRDIQIQ NSPRCHLKFD NCAGVKVTNL 240 SISSPGDSPN TDGIHLQNSQ RVEVENSTIS CGDDCISIQT GCSDVNIQNI KCGPGHGIRH 300 GA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-46 | 66 | 302 | 239 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-47 | 67 | 302 | 242 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-48 | 72 | 302 | 234 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 2.0e-51 | 66 | 302 | 240 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 6.0e-61 | 69 | 302 | 235 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN74591.1 | 0 | 18 | 243 | 28 | 238 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36959.1 | 0 | 1 | 302 | 1 | 302 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266099.1 | 0 | 62 | 301 | 74 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002270821.1 | 0 | 1 | 302 | 1 | 302 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002527898.1 | 0 | 62 | 301 | 75 | 310 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000002 | 163 | 302 | 113 | 257 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 0.00000001 | 75 | 281 | 33 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00000001 | 75 | 281 | 33 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00000001 | 75 | 281 | 33 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00000001 | 75 | 281 | 33 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
