| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01028170001 |
| Family | CE8 |
| Protein Properties | Length: 382 Molecular Weight: 41904.4 Isoelectric Point: 8.8486 |
| Chromosome | Chromosome/Scaffold: 7 Start: 4380862 End: 4382867 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 84 | 373 | 0 |
| MTVSQDGTADYTTISDALHTIPLYNTRRVILVIKPGVYREKVTVPRALPFVTFLGDASDPPTITGNDTASVIGRNGVPLKTFQSATVGVDANYFVAINIK FENTAPHVIGSAGGQAVALRISGTKAAFYNCSFYGSQDTLYDHTGLHYFNNCFIQGSVDFIFGYGRSLYENCSLNSVAKKVASLTAQKRSTSSMASGFSF KDCVVTGSGTVYLGRAWGDYSRVVFSYTFMDKLVLPQGWSDWGKKKLDSRVYYGEYKCSGPGANLTARVPWAHMMTDEEAEPFLATHYVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 382 Download |
| MASNTRLQII IFTISLCNLS LMSSSSWRSL DTQTDYRKWV SWNVENYRKK TALQPQSINE 60 TPSGGGGKAL DIKLSKAEMN KVTMTVSQDG TADYTTISDA LHTIPLYNTR RVILVIKPGV 120 YREKVTVPRA LPFVTFLGDA SDPPTITGND TASVIGRNGV PLKTFQSATV GVDANYFVAI 180 NIKFENTAPH VIGSAGGQAV ALRISGTKAA FYNCSFYGSQ DTLYDHTGLH YFNNCFIQGS 240 VDFIFGYGRS LYENCSLNSV AKKVASLTAQ KRSTSSMASG FSFKDCVVTG SGTVYLGRAW 300 GDYSRVVFSY TFMDKLVLPQ GWSDWGKKKL DSRVYYGEYK CSGPGANLTA RVPWAHMMTD 360 EEAEPFLATH YVDGDTWLIS P* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 2.0e-102 | 79 | 378 | 300 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 7.0e-104 | 84 | 378 | 297 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 8.0e-107 | 84 | 378 | 297 | + pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-127 | 38 | 381 | 349 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 1.0e-136 | 83 | 378 | 298 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79461.1 | 0 | 1 | 381 | 1 | 381 | hypothetical protein [Vitis vinifera] |
| GenBank | EAZ19254.1 | 0 | 38 | 381 | 77 | 426 | hypothetical protein OsJ_34791 [Oryza sativa Japonica Group] |
| GenBank | EEC69509.1 | 0 | 36 | 381 | 70 | 411 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
| RefSeq | NP_001067039.1 | 0 | 36 | 381 | 69 | 410 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002320279.1 | 0 | 92 | 378 | 1 | 287 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 84 | 378 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 86 | 380 | 7 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 8e-19 | 74 | 348 | 26 | 337 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 4e-17 | 80 | 366 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 4e-17 | 80 | 366 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
