| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01028189001 |
| Family | GH28 |
| Protein Properties | Length: 485 Molecular Weight: 52995.1 Isoelectric Point: 6.6006 |
| Chromosome | Chromosome/Scaffold: 7 Start: 4503236 End: 4507819 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 112 | 440 | 0 |
| WDTACQVEESAIVFVPYGYSFMIQSTIFTGPCQSRLVFQVDGTLTPPDGPDSWPQNNSKRQWLVFYRINEMSLQGGGLIDGRGENWWNLPCKPHKGINGT TLPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFNFRFDNCRDVHIESIYITAPALSPNTDGIHIENTNNVKIYNSVVSNGDDCVSIGSGCYDVDIKNITC GPSHGISIGSLGNHNSRACVSNITVRDSVLKYSDNGVRIKTWQGGSGAVSGVTFSNLHMNNVRNPIIIDQFYCLAKQCMNQTSAVLVSNIIYSNIKGTYD IRSPAMHFACSDSVPCTNLTLSDVELLPA | |||
| Full Sequence |
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| Protein Sequence Length: 485 Download |
| MIKTDLPLVP VIKLIEPKTM EYSRVLSLVF CICVCCCFFS TAQARSHKHS KHKHAHASPV 60 SQISLPPCPP PEPANQTNGG HSYNSTNVFD VRSFGAVGNG IADDTQAFKA AWDTACQVEE 120 SAIVFVPYGY SFMIQSTIFT GPCQSRLVFQ VDGTLTPPDG PDSWPQNNSK RQWLVFYRIN 180 EMSLQGGGLI DGRGENWWNL PCKPHKGING TTLPGPCDSP IAIRFFMSSN LTVQGLRIKN 240 SPQFNFRFDN CRDVHIESIY ITAPALSPNT DGIHIENTNN VKIYNSVVSN GDDCVSIGSG 300 CYDVDIKNIT CGPSHGISIG SLGNHNSRAC VSNITVRDSV LKYSDNGVRI KTWQGGSGAV 360 SGVTFSNLHM NNVRNPIIID QFYCLAKQCM NQTSAVLVSN IIYSNIKGTY DIRSPAMHFA 420 CSDSVPCTNL TLSDVELLPA QGELMLDPFC WNAYGDLETL TIPPVSCLME GTPRSALENY 480 LDHC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-83 | 83 | 468 | 398 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 5.0e-85 | 81 | 464 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-91 | 137 | 437 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-104 | 82 | 437 | 359 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-127 | 85 | 464 | 382 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 1 | 484 | 1 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272733.1 | 0 | 20 | 484 | 1 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302793.1 | 0 | 20 | 484 | 1 | 457 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320271.1 | 0 | 80 | 484 | 34 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 80 | 484 | 134 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-24 | 182 | 441 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-24 | 182 | 441 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-24 | 182 | 441 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-24 | 182 | 441 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-24 | 182 | 441 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479564 | 322 | 96 | 417 | 0 |
| DR450143 | 293 | 134 | 426 | 0 |
| CX663441 | 279 | 200 | 478 | 0 |
| DY277859 | 359 | 84 | 438 | 0 |
| DV135481 | 289 | 98 | 385 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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