| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01028548001 |
| Family | PL1 |
| Protein Properties | Length: 446 Molecular Weight: 49642.1 Isoelectric Point: 7.9341 |
| Chromosome | Chromosome/Scaffold: 7 Start: 9546235 End: 9551518 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 158 | 364 | 0 |
| VIQDKPLWIVFKRDMVIKLKQELIMNSFKTIDARGVNVHIANGACITIQFITNVIIHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWI DHNSLSNCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINS QGNRYLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 446 Download |
| MAVSLRWFSL CSLLVLVLFL RVNADELQKL RVEEKPDQLQ SLENSTMAER LDKSEGWNER 60 NEHAVENPEE VASMVDMSIR NSTERRNLGY FSCGTGNPID DCWRCDPHWQ LHRKRLADCG 120 IGFGRNAIGG RDGRYYVVTD PGDYDAVNPR PGTLRHAVIQ DKPLWIVFKR DMVIKLKQEL 180 IMNSFKTIDA RGVNVHIANG ACITIQFITN VIIHGLNIHD CKPTGNAMVR SSPSHYGWRT 240 MADGDGISIF GSSHIWIDHN SLSNCADGLI DAVMGSTAIT ISNNYFTHHN EVMLLGHSDS 300 YTRDKQMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS AEPTINSQGN 360 RYLAPANPFA KEVTKRVITS NSVWKHWNWR SEGDLLLNGA YFTPSGAGAA ASYARASSLG 420 AKSSSMVGTI TSGAGALSCR RGRQC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-27 | 184 | 360 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-70 | 177 | 362 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-80 | 171 | 365 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN75298.1 | 0 | 1 | 445 | 1 | 445 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI33346.1 | 0 | 1 | 445 | 1 | 430 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002265100.1 | 0 | 1 | 445 | 1 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002297822.1 | 0 | 1 | 445 | 1 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521130.1 | 0 | 1 | 445 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 97 | 438 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 97 | 438 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-16 | 166 | 364 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000002 | 245 | 339 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.000000000001 | 187 | 412 | 151 | 388 | A Chain A, Bacillus Subtilis Pectate Lyase |
