| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01028860001 |
| Family | GH28 |
| Protein Properties | Length: 622 Molecular Weight: 68030.7 Isoelectric Point: 5.6005 |
| Chromosome | Chromosome/Scaffold: 16 Start: 18030387 End: 18039463 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 80 | 271 | 0 |
| TDGGAELIVPPGKWLTGSFNLTSHFTLYIHKDAVILGSQEESDYPHIPPLPSYGKGRDGGGRFSSLIFGTNLTDVVIIGGNGTINGQGRVWWDKFKQKKL VDTRPYLIEIMFSDQVQISNLTLIDSPSWNVHPVYCSDVIIQGMTILAPVDVPNTDGINPDSCANVKIEDCYIVSGDDCIAVKSGWDQYGIK | |||
| GH28 | 331 | 546 | 0 |
| AGDGGAQLIVPPGKWLTGSFNLTSHFTLFVHKDAVILGAQDEAAYPLIEILPSYGAGRDGGGRHASLIFGTNLTDVVITGGNGTIHGQGQYWWDKFRADK LKDTRPYLIEIMYSDQVQISNLILIDSPSWNVHPTYSSNVIIQWLTIIAPVGSPNTDGINPDSSKNVLIEDCFIVSGDDCIAVKSGWDQYGIKCGKGRIY MVAENVTYSARLDGIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 622 Download |
| MGFLMFYXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XINCRKHSAL LTEFGGIGDG 60 KTSNTKAFKT AIDHLKQFAT DGGAELIVPP GKWLTGSFNL TSHFTLYIHK DAVILGSQEE 120 SDYPHIPPLP SYGKGRDGGG RFSSLIFGTN LTDVVIIGGN GTINGQGRVW WDKFKQKKLV 180 DTRPYLIEIM FSDQVQISNL TLIDSPSWNV HPVYCSDVII QGMTILAPVD VPNTDGINPD 240 SCANVKIEDC YIVSGDDCIA VKSGWDQYGI KYGAWEGEAI GRGEWGGSEE YRAINCRKHS 300 AVLTDFGAKG DGKTMNTKAF KSAIANLSQV AGDGGAQLIV PPGKWLTGSF NLTSHFTLFV 360 HKDAVILGAQ DEAAYPLIEI LPSYGAGRDG GGRHASLIFG TNLTDVVITG GNGTIHGQGQ 420 YWWDKFRADK LKDTRPYLIE IMYSDQVQIS NLILIDSPSW NVHPTYSSNV IIQWLTIIAP 480 VGSPNTDGIN PDSSKNVLIE DCFIVSGDDC IAVKSGWDQY GIKCGKGRIY MVAENVTYSA 540 RLDGISGDPF TGICISNVKI GLTEKPKKLQ WNCTNVEGVS SQVTPPSCDL LHPSKKVFNC 600 PFPEDKLPIE DLLNESNFLS F* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 9.0e-17 | 51 | 296 | 259 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-21 | 398 | 527 | 134 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 4.0e-26 | 303 | 527 | 230 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 6.0e-31 | 51 | 264 | 238 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| COG5434 | PGU1 | 5.0e-38 | 301 | 539 | 263 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22656.1 | 0 | 1 | 621 | 1 | 621 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273143.1 | 0 | 42 | 319 | 32 | 299 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273143.1 | 0 | 281 | 525 | 14 | 263 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273177.1 | 0 | 42 | 338 | 26 | 307 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273177.1 | 0 | 286 | 525 | 18 | 257 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-25 | 303 | 539 | 30 | 292 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_D | 3e-22 | 51 | 274 | 30 | 278 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-25 | 303 | 539 | 30 | 292 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-22 | 51 | 274 | 30 | 278 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-25 | 303 | 539 | 30 | 292 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE075933 | 232 | 290 | 521 | 0 |
| EE075933 | 228 | 42 | 269 | 0 |
| GR150506 | 236 | 290 | 525 | 0 |
| GR150506 | 232 | 42 | 273 | 0 |
| FC906391 | 233 | 42 | 273 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
