| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01028861001 |
| Family | GH28 |
| Protein Properties | Length: 343 Molecular Weight: 37594.1 Isoelectric Point: 7.7873 |
| Chromosome | Chromosome/Scaffold: 16 Start: 18026548 End: 18029340 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 85 | 337 | 0 |
| DGGAELIVPPGKWLTGSFNLTSHFTLYIDKDAVILGAQDESAYPLIEVLPSYGVGRDGGGRHSSLIFGTNLTDVVITGGNGTLNGQGKYWWDKFRAKKYN DTRPYLIEIMYSNHVQISNLTLIDSPSWNVHPVYSRNVLVKDLTILAPIDSPNTDGINPDSCKKVRIEDCFIVSGDDCIAVKSGWDQYGYKFGMPTKDLL IRRLTCISPDSATIALGSEMSGGIKNVWAEDITAIDTQSGIRIKTGIGRGGYI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 343 Download |
| MEFCLNSRKP HALGIVLAVL ILGLLSFRVA ECQTSSFMEP IKYKALRCRK HSAVLTDFGA 60 TGDGKTINTK AFKSAIDHLS QFADDGGAEL IVPPGKWLTG SFNLTSHFTL YIDKDAVILG 120 AQDESAYPLI EVLPSYGVGR DGGGRHSSLI FGTNLTDVVI TGGNGTLNGQ GKYWWDKFRA 180 KKYNDTRPYL IEIMYSNHVQ ISNLTLIDSP SWNVHPVYSR NVLVKDLTIL APIDSPNTDG 240 INPDSCKKVR IEDCFIVSGD DCIAVKSGWD QYGYKFGMPT KDLLIRRLTC ISPDSATIAL 300 GSEMSGGIKN VWAEDITAID TQSGIRIKTG IGRGGYIWWL RM* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-16 | 54 | 265 | 222 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-18 | 55 | 290 | 243 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-23 | 150 | 322 | 178 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 4.0e-24 | 55 | 268 | 216 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 6.0e-51 | 53 | 321 | 293 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22657.1 | 0 | 1 | 342 | 1 | 342 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273143.1 | 0 | 19 | 337 | 5 | 323 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273177.1 | 0 | 42 | 337 | 22 | 317 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273669.1 | 0 | 1 | 337 | 1 | 337 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002513653.1 | 0 | 1 | 337 | 1 | 338 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.00386e-43 | 20 | 337 | 1 | 338 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.00386e-43 | 20 | 337 | 1 | 338 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.00386e-43 | 20 | 337 | 1 | 338 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.00386e-43 | 20 | 337 | 1 | 338 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000002 | 97 | 341 | 52 | 295 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
