| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01029048001 |
| Family | PL1 |
| Protein Properties | Length: 431 Molecular Weight: 46981.8 Isoelectric Point: 7.9385 |
| Chromosome | Chromosome/Scaffold: 5 Start: 11376715 End: 11380856 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 142 | 348 | 0 |
| AVIQDAPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITVQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIW VDHNSLSSCADGLVDAVMGSTAITISNNHFAHHNEVMLLGHSDSYERDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIN SQGNRYL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 431 Download |
| MAGSKGWTSL CSLLLFFLFV AVMANDRNGG TEQLQSSNNS SMAARNEHAV DDPDAVASMV 60 DMSIRNSTER RKLGYFSCGT GNPIDDCWRC DHNWQKNRKR LADCGIGFGR NAIGGRDGRF 120 YVVTDPGDDD PVNPKPGTLR HAVIQDAPLW IVFKRDMVIT LKQELIMNSF KTIDGRGVNV 180 HIANGACITV QFVTNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AISIFGSSHI 240 WVDHNSLSSC ADGLVDAVMG STAITISNNH FAHHNEVMLL GHSDSYERDK QMQVTIAYNH 300 FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSASPTI NSQGNRYLAP VNPFAKEVTK 360 RVDTPSGQWK GWNWRSEGDL LLNGAYFTPS GAGASASYAR ASSLGAKSSS MVGSITSNAG 420 ALSCRRGSQC * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-27 | 169 | 345 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-70 | 162 | 347 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-79 | 156 | 350 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADD62392.1 | 0 | 23 | 430 | 30 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 14 | 430 | 1 | 425 | pectate lyase [Prunus persica] |
| EMBL | CAN78491.1 | 0 | 1 | 430 | 1 | 418 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI33346.1 | 0 | 1 | 430 | 1 | 430 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002285639.1 | 0 | 1 | 430 | 3 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 82 | 423 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 82 | 423 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-17 | 151 | 348 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000002 | 172 | 421 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000002 | 172 | 421 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
