| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01030018001 |
| Family | GH28 |
| Protein Properties | Length: 453 Molecular Weight: 48923.8 Isoelectric Point: 8.5333 |
| Chromosome | Chromosome/Scaffold: 12 Start: 8959646 End: 8966657 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 383 | 0 |
| GDSCSSPVASTVMIPNGTYALGQITIGGPCKAPINFVVQGTVMAPVDTSRFKAEAGWIAFQQIDQFTLSGGGVFDGQGKTVWGRKCPHYAYCKQLPINLR FNFITNSMVKDITSRDSKQFHINLLGCKNLAFYNVAISAPDESLNTDGIHIGRSSGINITDSTIETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGK YPNEEPVVGISVKNCTLTNTQNGVRVKTFPASHQGIASEMHFEDIVMNNVGNPIIIDQEYCPHNQCNLKSPSRIKLSNVSFRNIRGTTSTQVAVKLLCSQ GVPCQDVELGDINLKYNGKEGPAMSQCKNIKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| MGLKLNIAGT SLLLLLASAA EVSGDIIFDV TKYGARADGH SDISQALLKA WGDSCSSPVA 60 STVMIPNGTY ALGQITIGGP CKAPINFVVQ GTVMAPVDTS RFKAEAGWIA FQQIDQFTLS 120 GGGVFDGQGK TVWGRKCPHY AYCKQLPINL RFNFITNSMV KDITSRDSKQ FHINLLGCKN 180 LAFYNVAISA PDESLNTDGI HIGRSSGINI TDSTIETGDD CVSIGDGSEQ INIQRVTCGP 240 GHGISVGSLG KYPNEEPVVG ISVKNCTLTN TQNGVRVKTF PASHQGIASE MHFEDIVMNN 300 VGNPIIIDQE YCPHNQCNLK SPSRIKLSNV SFRNIRGTTS TQVAVKLLCS QGVPCQDVEL 360 GDINLKYNGK EGPAMSQCKN IKPNLLGQEP FSVIHALNLI ARATTQPIVE RSSRNWRLST 420 TRASQCMMRL GKDSVTKRKK NEDKNMPSRN ER* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-84 | 30 | 366 | 342 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-90 | 27 | 370 | 350 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-97 | 22 | 387 | 371 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-123 | 55 | 382 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-141 | 23 | 389 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28390.1 | 0 | 1 | 452 | 1 | 452 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269648.1 | 0 | 32 | 387 | 1 | 356 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002274125.1 | 0 | 1 | 387 | 1 | 387 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 1 | 387 | 1 | 387 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 1 | 387 | 1 | 387 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-19 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-19 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-19 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-19 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-19 | 118 | 381 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
