| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01030029001 |
| Family | GH28 |
| Protein Properties | Length: 106 Molecular Weight: 11599.4 Isoelectric Point: 8.1265 |
| Chromosome | Chromosome/Scaffold: 12 Start: 8999971 End: 9000576 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 93 | 2.2e-26 |
| HFEDIVMNNVGNPIIIDQEYCPHNQCNLKIPSRIMLSNVSFRNIRGTTSTQVAVKLVCSQGVPCEDAELGDINLKYNGKVGHAMSQCKNIKP | |||
| Full Sequence |
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| Protein Sequence Length: 106 Download |
| MHFEDIVMNN VGNPIIIDQE YCPHNQCNLK IPSRIMLSNV SFRNIRGTTS TQVAVKLVCS 60 QGVPCEDAEL GDINLKYNGK VGHAMSQCKN IKPNLLGTQL PRTCA* 120 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-16 | 3 | 102 | 100 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-17 | 3 | 80 | 79 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-22 | 3 | 104 | 102 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-28 | 1 | 92 | 92 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-39 | 1 | 105 | 105 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28398.1 | 0 | 1 | 105 | 1 | 105 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269648.1 | 0 | 1 | 105 | 260 | 364 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002274125.1 | 0 | 1 | 105 | 291 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282563.1 | 0 | 1 | 105 | 291 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 1 | 105 | 291 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC944260 | 105 | 1 | 105 | 7.00649e-44 |
| EC923738 | 105 | 1 | 105 | 9.94922e-44 |
| EC935564 | 105 | 1 | 105 | 9.94922e-44 |
| EC947475 | 105 | 1 | 105 | 2.99878e-43 |
| EC939231 | 105 | 1 | 105 | 2.99878e-43 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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