| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01030030001 |
| Family | GH28 |
| Protein Properties | Length: 359 Molecular Weight: 39076.6 Isoelectric Point: 7.2227 |
| Chromosome | Chromosome/Scaffold: 12 Start: 9001078 End: 9003062 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 49 | 321 | 0 |
| WEAACASPIASRVVIPAGIYALGQVTIEGPCKAPINLIVKGTVRAPVDTSRFKPQAGWVAFQHLDQFTLSGYGVFDGQGQSVWGQKCSRTKYCHQLPINL RFNFLTNSIIKDITSKDSKQFHINVLGCRNITFFQVAITAPEDSQNTDGIHIGRSRGVNITHSTIQTGDDCVSIGDGSEQIDITKVNCGPGHGISVGSLG LYKNEAPVIGIRVKNCTLSDTTNGVRVKTWPSSPQGTATEMHFHDIVMNNVSNPIIIDQEYCPHNQCNLQTST | |||
| Full Sequence |
|---|
| Protein Sequence Length: 359 Download |
| MKLNIAAISL LLLLTSVAEV SGDTYFDVTK YGAQADGKTD ISQALLTAWE AACASPIASR 60 VVIPAGIYAL GQVTIEGPCK APINLIVKGT VRAPVDTSRF KPQAGWVAFQ HLDQFTLSGY 120 GVFDGQGQSV WGQKCSRTKY CHQLPINLRF NFLTNSIIKD ITSKDSKQFH INVLGCRNIT 180 FFQVAITAPE DSQNTDGIHI GRSRGVNITH STIQTGDDCV SIGDGSEQID ITKVNCGPGH 240 GISVGSLGLY KNEAPVIGIR VKNCTLSDTT NGVRVKTWPS SPQGTATEMH FHDIVMNNVS 300 NPIIIDQEYC PHNQCNLQTS THALEILDQY SNQLKYMRIN VEYVCIVKLE NKIKGLEM* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-74 | 18 | 320 | 308 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-74 | 20 | 314 | 296 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-81 | 26 | 320 | 302 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-101 | 53 | 321 | 269 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-115 | 6 | 315 | 312 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN65676.1 | 0 | 1 | 318 | 192 | 509 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN65676.1 | 0 | 179 | 315 | 1 | 137 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI28394.1 | 0 | 1 | 318 | 1 | 318 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI28399.1 | 0 | 1 | 358 | 1 | 358 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273500.1 | 0 | 1 | 318 | 1 | 318 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-17 | 119 | 317 | 115 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 0.000000000000007 | 123 | 309 | 115 | 291 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.000000000000007 | 123 | 309 | 115 | 291 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.00000000000002 | 116 | 309 | 73 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000002 | 116 | 309 | 73 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
