| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01030503001 |
| Family | CBM43 |
| Protein Properties | Length: 356 Molecular Weight: 38408.7 Isoelectric Point: 7.8184 |
| Chromosome | Chromosome/Scaffold: 12 Start: 6264462 End: 6266803 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 24 | 113 | 1.3e-29 |
| IGVNYGRIANNLPSAVKVVQLLKSQGIERVKVFDTDPAVLKALGESGIKVTVDLPNELLISAAKRQSFANTWVQKNVADYFPATKIEAIA | |||
| CBM43 | 267 | 350 | 9.6e-34 |
| WCVANGETGKEKLQAALDYACGEGQADCHPIQPGATCYDPNTLEAHASFAFNSYYQKKGRVIGTCDFQGAAYVVTQAPRFGKCE | |||
| GH17 | 124 | 253 | 0 |
| LHSHIKFLRQTGSYLMVNAYPFFAYEANSDVISLDYALFRENPGVVDAGNGLRYFNLFDAQIDAVFAAMSALKYNDIKMVVTETGWPSKGDENEIGASVA NAAAYNGNLVRRILTGGGTPLRPKADLVVF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 356 Download |
| MERRALHSFL LVISIFAFAD AGSIGVNYGR IANNLPSAVK VVQLLKSQGI ERVKVFDTDP 60 AVLKALGESG IKVTVDLPNE LLISAAKRQS FANTWVQKNV ADYFPATKIE AIANIHKALV 120 KYNLHSHIKF LRQTGSYLMV NAYPFFAYEA NSDVISLDYA LFRENPGVVD AGNGLRYFNL 180 FDAQIDAVFA AMSALKYNDI KMVVTETGWP SKGDENEIGA SVANAAAYNG NLVRRILTGG 240 GTPLRPKADL VVFLGGSVSP SSSGQTWCVA NGETGKEKLQ AALDYACGEG QADCHPIQPG 300 ATCYDPNTLE AHASFAFNSY YQKKGRVIGT CDFQGAAYVV TQAPRFGKCE FPTGY* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0007 | 140 | 237 | 106 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 3.0e-25 | 266 | 338 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-40 | 266 | 351 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-65 | 24 | 246 | 276 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28862.1 | 0 | 1 | 355 | 1 | 355 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_178637.2 | 0 | 20 | 355 | 21 | 472 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002274828.1 | 0 | 1 | 254 | 1 | 310 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002333242.1 | 0 | 15 | 355 | 15 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525335.1 | 0 | 19 | 344 | 19 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 3.00004e-41 | 24 | 248 | 1 | 268 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 3.00004e-41 | 24 | 248 | 1 | 268 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 4.99997e-41 | 24 | 254 | 1 | 280 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 5e-33 | 24 | 254 | 3 | 281 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 5e-33 | 24 | 254 | 3 | 281 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
