Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01031250001 |
Family | CE8 |
Protein Properties | Length: 547 Molecular Weight: 60859.4 Isoelectric Point: 6.0287 |
Chromosome | Chromosome/Scaffold: 14 Start: 799206 End: 817337 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 56 | 207 | 0 |
AYRAVAAMVHGEHISFYECGFVSVQDTLWDKEGHHLFKSCYIEGHVDFIFGDGTSVYEDCKLNSIGSGYITAQKRESPQAESGFVFKSAELYGVGPTYLG RAYGPYSRVLFYQSKFANIVRPEGWDSIGEDPNQLTYAEVECTGEGADTSKR | |||
CE8 | 248 | 534 | 0 |
ITVASSGQANFRKIQDAIDVIPSGNNEWIRIKVSPGVYFEKVNIPIEKPYIFLEGHGAEATIIKWGDHSETNQSATFTSSADNFVAKDISFQNSYNMPLY PTPPIKPAAAATIYGDKSAFYSCGFVGLQDTLWDVSGRHYFSHCYIEGAVDFICGDGQSFYENCHIKVNGRLLPSGAWGGYITAQKRSSPSDHSGFVFHG GLVVGSGKFFLGRAWGPYSRVIFQGTRFDIDVMPEGWDAWRQPVGNLVYVEQGCSGKGSDVRKRVEWSKHSLNESEMQLYSRAYFIQ |
Full Sequence |
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Protein Sequence Length: 547 Download |
MLNPSSLSIS PAMEIFPQFK KPLILCRKTI PGGYESVSTL GFTELAHLQD KDNGGAYRAV 60 AAMVHGEHIS FYECGFVSVQ DTLWDKEGHH LFKSCYIEGH VDFIFGDGTS VYEDCKLNSI 120 GSGYITAQKR ESPQAESGFV FKSAELYGVG PTYLGRAYGP YSRVLFYQSK FANIVRPEGW 180 DSIGEDPNQL TYAEVECTGE GADTSKRCLP FLLLIFILQT IFFEDSRAAY FRSDEKYFPS 240 QVSIAKTITV ASSGQANFRK IQDAIDVIPS GNNEWIRIKV SPGVYFEKVN IPIEKPYIFL 300 EGHGAEATII KWGDHSETNQ SATFTSSADN FVAKDISFQN SYNMPLYPTP PIKPAAAATI 360 YGDKSAFYSC GFVGLQDTLW DVSGRHYFSH CYIEGAVDFI CGDGQSFYEN CHIKVNGRLL 420 PSGAWGGYIT AQKRSSPSDH SGFVFHGGLV VGSGKFFLGR AWGPYSRVIF QGTRFDIDVM 480 PEGWDAWRQP VGNLVYVEQG CSGKGSDVRK RVEWSKHSLN ESEMQLYSRA YFIQDTWLAT 540 QPGRYD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02176 | PLN02176 | 3.0e-40 | 59 | 207 | 159 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 6.0e-55 | 59 | 207 | 159 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-81 | 239 | 541 | 305 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 3.0e-89 | 244 | 542 | 302 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 8.0e-107 | 245 | 542 | 302 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN67070.1 | 2e-40 | 59 | 207 | 150 | 306 | hypothetical protein [Vitis vinifera] |
EMBL | CAN67070.1 | 0 | 219 | 516 | 14 | 311 | hypothetical protein [Vitis vinifera] |
EMBL | CBI39604.1 | 0 | 1 | 546 | 1 | 546 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277623.1 | 4.00001e-41 | 59 | 207 | 150 | 306 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277623.1 | 0 | 219 | 546 | 14 | 341 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-34 | 243 | 538 | 4 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1gq8_A | 1e-22 | 36 | 208 | 88 | 279 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-24 | 244 | 538 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1xg2_A | 7e-16 | 58 | 208 | 109 | 275 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-21 | 248 | 542 | 8 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV984237 | 289 | 257 | 538 | 0 |
GE477037 | 234 | 242 | 470 | 0 |
FC372426 | 289 | 256 | 538 | 0 |
DV984237 | 160 | 58 | 207 | 4e-37 |
GE477037 | 111 | 58 | 166 | 5e-26 |
Sequence Alignments (This image is cropped. Click for full image.) |
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