y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01031298001 |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 50879.7 Isoelectric Point: 6.9464 |
Chromosome | Chromosome/Scaffold: 14 Start: 564029 End: 565883 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 95 | 423 | 0 |
TACQAESATLLVPHGHSFMIQSTIFTGPCKTGLIFQIEGTIMAPDGPSSWPQGNSRRQWLVFYRINEMSMQGGGVIDGRGEKWWDLPCKPHKGINGTTLP GPCDSPVAIRFFTSSNLTVQGLKIKNSPQFHFRFDNCQNVHIDLLNIKAPAESPNTDGIHIENTNGVKIYNSIVSNGDDCVSIGAGCHNVDIRNITCGPS HGISIGSLGIRNSRACVSNITVTDSIIKHSANGVRIKTWQGGSGSVSKVTFNNIHMDTVRNPIIIDQYYCLTKGCVNQTSAVLISHISYTNIKGTYDVRS SPMHFACSDSVPCTNLTLSEVELLPSKGQ |
Full Sequence |
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Protein Sequence Length: 465 Download |
MEFSRAFVVV ASIFLCFLLV FFCSRFQDHE YHEEHEHLHT FSRISLPPSP APEAASPSYN 60 GYSSIYTAVF NVRSFGAVGD GVTDDTQAFK MTWDTACQAE SATLLVPHGH SFMIQSTIFT 120 GPCKTGLIFQ IEGTIMAPDG PSSWPQGNSR RQWLVFYRIN EMSMQGGGVI DGRGEKWWDL 180 PCKPHKGING TTLPGPCDSP VAIRFFTSSN LTVQGLKIKN SPQFHFRFDN CQNVHIDLLN 240 IKAPAESPNT DGIHIENTNG VKIYNSIVSN GDDCVSIGAG CHNVDIRNIT CGPSHGISIG 300 SLGIRNSRAC VSNITVTDSI IKHSANGVRI KTWQGGSGSV SKVTFNNIHM DTVRNPIIID 360 QYYCLTKGCV NQTSAVLISH ISYTNIKGTY DVRSSPMHFA CSDSVPCTNL TLSEVELLPS 420 KGQIMMNPFC WNAYGASQTL TIPPLFCLLE GTSQSLPQRE VDKC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-83 | 66 | 448 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 6.0e-85 | 67 | 444 | 385 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-96 | 97 | 417 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-103 | 71 | 417 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-131 | 69 | 444 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 42 | 464 | 61 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 464 | 1 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 61 | 464 | 34 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 69 | 454 | 21 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 8 | 464 | 1 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-30 | 162 | 421 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-30 | 162 | 421 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-30 | 162 | 421 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-30 | 162 | 421 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-30 | 162 | 421 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |