| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01031619001 |
| Family | CBM43 |
| Protein Properties | Length: 376 Molecular Weight: 41880.5 Isoelectric Point: 4.5794 |
| Chromosome | Chromosome/Scaffold: 5 Start: 19068828 End: 19070888 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 286 | 369 | 1.2e-27 |
| WCVVASEVNPEQLVSALIYACSQGNGTCDALMPGKECYEPFSLLSHASYAFSSYWAKFRSLGANCYFNGLAVQTTEDPSRGSCK | |||
| GH17 | 25 | 211 | 0 |
| AFTRTKIQVSIMVPNQEISNISSNQTLADQWVRDNVLSYYPQTMIRFIVVGNEVLSYYSDRDRETWSNLVPAMRRIKKSLQANNIPNIKVGTSVAMDVME SSFPPSSGMFRSDILDTVMVPLLEFLSGTNSFFFLDVYPYLAWSANPSNISLDYALFRDGNLNYTDPISNLTYTNLLDEMLDSMTAK | |||
| Full Sequence |
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| Protein Sequence Length: 376 Download |
| MEKHSSGDEV TEMCLLALSF FSFLAFTRTK IQVSIMVPNQ EISNISSNQT LADQWVRDNV 60 LSYYPQTMIR FIVVGNEVLS YYSDRDRETW SNLVPAMRRI KKSLQANNIP NIKVGTSVAM 120 DVMESSFPPS SGMFRSDILD TVMVPLLEFL SGTNSFFFLD VYPYLAWSAN PSNISLDYAL 180 FRDGNLNYTD PISNLTYTNL LDEMLDSMTA KPAVGTPARP GMTIPTFIFA LYNENQKRGP 240 GTERHWGLLD CNGKPVYGVD LTGELESNDD QLPMPQNNKP YQGKIWCVVA SEVNPEQLVS 300 ALIYACSQGN GTCDALMPGK ECYEPFSLLS HASYAFSSYW AKFRSLGANC YFNGLAVQTT 360 EDPSRGSCKF PTVTL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 6.0e-15 | 286 | 357 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-30 | 286 | 370 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-70 | 29 | 260 | 274 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN60692.1 | 0 | 13 | 305 | 1 | 392 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI39414.1 | 0 | 1 | 375 | 1 | 375 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI39470.1 | 0 | 25 | 375 | 70 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002298669.1 | 0 | 26 | 375 | 65 | 462 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334812.1 | 0 | 29 | 375 | 72 | 465 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 4e-38 | 8 | 261 | 25 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 2e-34 | 25 | 261 | 42 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 2e-34 | 25 | 261 | 42 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 2e-33 | 8 | 261 | 25 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 2e-33 | 8 | 261 | 25 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DT572251 | 304 | 69 | 323 | 0 |
| EX291357 | 339 | 59 | 347 | 0 |
| DR944118 | 276 | 66 | 292 | 0 |
| EX279500 | 323 | 59 | 331 | 0 |
| DT737283 | 271 | 157 | 376 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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