| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01032114001 |
| Family | GH28 |
| Protein Properties | Length: 318 Molecular Weight: 34474.5 Isoelectric Point: 4.5465 |
| Chromosome | Chromosome/Scaffold: 13 Start: 22543518 End: 22546071 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 110 | 313 | 0 |
| ETCSSNTAVLVVPENKKCHVKPITFSGPCKSDSVTLKILGTIKASDDPSHYKNDRSHWLVFYNIKNFQVEGQGTIDGNGKIGWKNLCKINIIQPCIVAPT LISFIQCNDLKVYGLNVQNAQEMHVSFEQSVNVQAFNIRVTSPGTSPNTDGIHVTRSENVQIIKPVIQAGDDCISIVNGSKNIEAIDVTCGPGHGISIGS LGGG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 318 Download |
| MNKSIVDTIL GICRNFQDDP LGNFLEQTPG YDPSAYPSFF GTVDKDRADD FGVSFTNLQM 60 EYEPEIVESM RYDHLGTPAT SQGEVNVENF GAEGDGETDD TEAFKKAWDE TCSSNTAVLV 120 VPENKKCHVK PITFSGPCKS DSVTLKILGT IKASDDPSHY KNDRSHWLVF YNIKNFQVEG 180 QGTIDGNGKI GWKNLCKINI IQPCIVAPTL ISFIQCNDLK VYGLNVQNAQ EMHVSFEQSV 240 NVQAFNIRVT SPGTSPNTDG IHVTRSENVQ IIKPVIQAGD DCISIVNGSK NIEAIDVTCG 300 PGHGISIGSL GGGKSEA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 8.0e-41 | 86 | 299 | 217 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-45 | 85 | 299 | 216 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-48 | 112 | 299 | 189 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-67 | 75 | 299 | 228 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-69 | 87 | 299 | 215 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN78059.1 | 0 | 15 | 317 | 23 | 316 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI24900.1 | 0 | 1 | 317 | 1 | 317 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI24903.1 | 0 | 12 | 317 | 17 | 320 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI24904.1 | 0 | 15 | 317 | 17 | 318 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274775.1 | 0 | 16 | 317 | 11 | 311 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.000000000000009 | 60 | 289 | 3 | 269 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.000000000000009 | 60 | 289 | 3 | 269 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.000000000000009 | 60 | 289 | 3 | 269 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.000000000000009 | 60 | 289 | 3 | 269 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000003 | 175 | 309 | 110 | 257 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB972136 | 161 | 15 | 147 | 0 |
| CB972202 | 161 | 15 | 147 | 0 |
| GW836619 | 180 | 15 | 194 | 0 |
| EH732884 | 215 | 86 | 299 | 0 |
| EH769463 | 210 | 91 | 299 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
