| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01032117001 |
| Family | GH28 |
| Protein Properties | Length: 434 Molecular Weight: 47721.6 Isoelectric Point: 4.5776 |
| Chromosome | Chromosome/Scaffold: 13 Start: 22516109 End: 22524142 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 112 | 431 | 0 |
| EETCSSNTAVLVVPQNKKYHVKPITFSGPCKSDSVKLKILGTIKASEDPSDYAKDRSRWLLFYNIKNFQVEGQGTIDGNGKIWWKNSCKINITQPCTNAP TAVSFVQCDNLKVYGLNVQDAQQMHVSFEESMNVQASNIMVTSSEESPNTDGIHVTRSENVQIIKTVIKTGDDCISIVNGSTNIEAIDVTCGPGHGISIG SLGKGKSEARVSNVMVNTAKLIGTTNGVRIKTWQGGSGYAENIVFQDIKMENVSNPIIIDQNYCDQETPCNEQNSAVQIRNIVYKNITGTSATKMTIIFN CSKTLPCQGIVQKDINLVYK | |||
| Full Sequence |
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| Protein Sequence Length: 434 Download |
| MYDLFFFFND FELPCRIVKF FQDDNLANFL DGTPGPSAYP PFFGTIDKDR AVDFEASFAN 60 LQMEYEAEIV DSTRYDQLGT PATSLGEVNV DDFGAKGDGV TDDTEAFKTA WEETCSSNTA 120 VLVVPQNKKY HVKPITFSGP CKSDSVKLKI LGTIKASEDP SDYAKDRSRW LLFYNIKNFQ 180 VEGQGTIDGN GKIWWKNSCK INITQPCTNA PTAVSFVQCD NLKVYGLNVQ DAQQMHVSFE 240 ESMNVQASNI MVTSSEESPN TDGIHVTRSE NVQIIKTVIK TGDDCISIVN GSTNIEAIDV 300 TCGPGHGISI GSLGKGKSEA RVSNVMVNTA KLIGTTNGVR IKTWQGGSGY AENIVFQDIK 360 MENVSNPIII DQNYCDQETP CNEQNSAVQI RNIVYKNITG TSATKMTIIF NCSKTLPCQG 420 IVQKDINLVY KEN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 5.0e-82 | 83 | 428 | 349 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-88 | 88 | 431 | 347 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-105 | 115 | 430 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-127 | 78 | 428 | 354 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-131 | 90 | 428 | 341 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN78059.1 | 0 | 4 | 433 | 8 | 422 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI24900.1 | 0 | 17 | 320 | 12 | 317 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI24903.1 | 0 | 1 | 433 | 1 | 433 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI24904.1 | 0 | 15 | 433 | 12 | 432 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274775.1 | 0 | 21 | 433 | 11 | 425 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-23 | 178 | 428 | 110 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 3e-20 | 171 | 410 | 62 | 301 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-20 | 171 | 410 | 62 | 301 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-20 | 171 | 410 | 62 | 301 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-20 | 171 | 410 | 62 | 301 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC945774 | 247 | 188 | 434 | 0 |
| EC938941 | 214 | 221 | 434 | 0 |
| EC943860 | 210 | 225 | 434 | 0 |
| EC949874 | 181 | 254 | 434 | 0 |
| GW836619 | 178 | 21 | 198 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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