| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01032118001 |
| Family | GH28 |
| Protein Properties | Length: 457 Molecular Weight: 50392.8 Isoelectric Point: 4.6323 |
| Chromosome | Chromosome/Scaffold: 13 Start: 22507982 End: 22515439 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 111 | 443 | 0 |
| KETCSSNVGVLVVPEKKYRLKPITFSGPCKSDFVMLKILGMIVASNDRSDYAKDRRHWLLFNNIKNFIVEGQGTIDGNGKIWWKNSCKINKTQPCTVAPT AVTFRRCENLRVCGLNIKNAQQMHVRFEQSVDVQAFNVMLTAPEDSPNTDGIHVTGSQNVQIISSVIRTGDDCISIVNGSKNVQALDVTCGPGHGISIGS LGEGNSEAFVSNVMVNKAKLIGTTNGVRIKTWQGGSGYAKNIVFQNIIMENVSNPIIIDQNYCDQDTPCEEQDSAVQIKGVVYKNIKGTSASEMAIKFNC SSTFPCQGIVLQDIDLVSYEEDREANSTCMNVM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 457 Download |
| MCKGCFIISC RCYLSNDFQD DPLANFLDQA PGYDPSAYPS FFGTIHDDRN DDFEERFANL 60 KMEYEPEIID SMRYDQLGTP ATLLGEVNVD DYGAEGDGIT DDTEAFKKAW KETCSSNVGV 120 LVVPEKKYRL KPITFSGPCK SDFVMLKILG MIVASNDRSD YAKDRRHWLL FNNIKNFIVE 180 GQGTIDGNGK IWWKNSCKIN KTQPCTVAPT AVTFRRCENL RVCGLNIKNA QQMHVRFEQS 240 VDVQAFNVML TAPEDSPNTD GIHVTGSQNV QIISSVIRTG DDCISIVNGS KNVQALDVTC 300 GPGHGISIGS LGEGNSEAFV SNVMVNKAKL IGTTNGVRIK TWQGGSGYAK NIVFQNIIME 360 NVSNPIIIDQ NYCDQDTPCE EQDSAVQIKG VVYKNIKGTS ASEMAIKFNC SSTFPCQGIV 420 LQDIDLVSYE EDREANSTCM NVMELETRGR VSPTCS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-96 | 82 | 447 | 372 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-100 | 87 | 442 | 360 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-119 | 114 | 442 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-144 | 89 | 453 | 368 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-150 | 77 | 456 | 384 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN78059.1 | 0 | 6 | 432 | 14 | 422 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI24903.1 | 0 | 12 | 432 | 15 | 433 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI24904.1 | 0 | 1 | 456 | 1 | 456 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274775.1 | 0 | 18 | 456 | 11 | 449 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002308956.1 | 0 | 16 | 455 | 11 | 442 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-24 | 179 | 407 | 113 | 370 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-18 | 185 | 399 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 185 | 399 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-18 | 185 | 399 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-18 | 185 | 399 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC945774 | 255 | 186 | 440 | 0 |
| EC938941 | 222 | 219 | 440 | 0 |
| EC943860 | 217 | 224 | 440 | 0 |
| EE093402 | 256 | 161 | 416 | 0 |
| EE091344 | 243 | 184 | 426 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
