| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01033303001 |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 47419.7 Isoelectric Point: 8.7802 |
| Chromosome | Chromosome/Scaffold: 8 Start: 21672956 End: 21675817 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 101 | 434 | 0 |
| KAACSSPGSVLVVPKNKNYLLKPITFQGPCKSSITVQIYGTVQASTDRSAYSNDMTHWLIFENVQNLAVQGGGTINGNGKTWWENSCKVNYDLPCKGAPT ALTFYNCKNLAVKNLKIQNAQQMHVSFEKCVGVQASGLTITAPGNSPNTDGIHVSYTKIIQISSSVIGTGDDCISIVSGSQKVQVNGITCGPGHGISIGS LGSGDSEAHVSDVTVNGATLSGTTNGVRIKTWQGGSGSASNIKFQNIVMHNVENPIIIDQKYCDQSKPCKSQSSAVQVQNVLYQNIKGTSSSKEAISLDC SAKFPCQGILLRDIDIKVGGGKAAKAVCSNARVT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MSLQRRFVPC LIVFLLSFPC YFSLQASPPY DYLGEASGYD SQANHLHFST IQSRETENWP 60 WRKFGSKTGK SLASVKMVNV NYYGAKGDGS DATEAFKKAW KAACSSPGSV LVVPKNKNYL 120 LKPITFQGPC KSSITVQIYG TVQASTDRSA YSNDMTHWLI FENVQNLAVQ GGGTINGNGK 180 TWWENSCKVN YDLPCKGAPT ALTFYNCKNL AVKNLKIQNA QQMHVSFEKC VGVQASGLTI 240 TAPGNSPNTD GIHVSYTKII QISSSVIGTG DDCISIVSGS QKVQVNGITC GPGHGISIGS 300 LGSGDSEAHV SDVTVNGATL SGTTNGVRIK TWQGGSGSAS NIKFQNIVMH NVENPIIIDQ 360 KYCDQSKPCK SQSSAVQVQN VLYQNIKGTS SSKEAISLDC SAKFPCQGIL LRDIDIKVGG 420 GKAAKAVCSN ARVTVMGDVS PNCA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-87 | 79 | 430 | 357 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-98 | 73 | 441 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-117 | 104 | 434 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-136 | 74 | 441 | 371 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-150 | 71 | 443 | 377 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK81876.1 | 0 | 1 | 444 | 1 | 444 | polygalacturonase PG1 [Vitis vinifera] |
| EMBL | CBI29907.1 | 0 | 1 | 443 | 1 | 441 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277214.1 | 0 | 1 | 443 | 48 | 488 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282759.1 | 0 | 1 | 443 | 1 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282772.1 | 0 | 1 | 443 | 1 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-26 | 86 | 362 | 19 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-20 | 167 | 389 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-20 | 167 | 389 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-20 | 167 | 389 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-20 | 167 | 389 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
