| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01033349001 |
| Family | GH28 |
| Protein Properties | Length: 350 Molecular Weight: 39251.4 Isoelectric Point: 7.3145 |
| Chromosome | Chromosome/Scaffold: 8 Start: 21311999 End: 21315741 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 20 | 253 | 0 |
| TGACLGDECRPRLVGFLGCRNVRVWNIRLNEPAYWCLHLVGCNNTSIHDVSIYGDFNTPNNDGIDIEDSNNTVITRCSISTGDDSICPKTSNGPLYNLTV TNCWLRSRSSAIKLGSGSFYDFKGLVFDNITIDDSHRGLGMQIRDGGDVSDVTFSNMNIKTRYYEPVLWWGRAEPIYITTCPRDSNSKEGSISNIRFINI SATSENGVFLSGSKAGLLSNLRFQNVNFTYRRWT | |||
| Full Sequence |
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| Protein Sequence Length: 350 Download |
| MKFVKRFEEA KNVMVSWNET GACLGDECRP RLVGFLGCRN VRVWNIRLNE PAYWCLHLVG 60 CNNTSIHDVS IYGDFNTPNN DGIDIEDSNN TVITRCSIST GDDSICPKTS NGPLYNLTVT 120 NCWLRSRSSA IKLGSGSFYD FKGLVFDNIT IDDSHRGLGM QIRDGGDVSD VTFSNMNIKT 180 RYYEPVLWWG RAEPIYITTC PRDSNSKEGS ISNIRFINIS ATSENGVFLS GSKAGLLSNL 240 RFQNVNFTYR RWTNFPDDLV DYRPGCRGLV KHSPAGMIME HIDGLELENV NMRWSGVIQN 300 KRWNNPLDFL PSTVNNISFL NFQSGSDSNI MSLLNLKTFM TGKPLIAPS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-7 | 38 | 225 | 193 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-10 | 30 | 250 | 239 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-10 | 29 | 175 | 191 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-13 | 30 | 249 | 235 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-26 | 17 | 173 | 171 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29894.1 | 0 | 1 | 349 | 1 | 349 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_567055.1 | 0 | 2 | 325 | 145 | 469 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 1 | 328 | 141 | 468 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 1 | 328 | 141 | 463 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 1 | 325 | 118 | 440 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.00000000002 | 4 | 250 | 164 | 391 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00000000002 | 4 | 250 | 164 | 391 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00000000002 | 4 | 250 | 164 | 391 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00000000002 | 4 | 250 | 164 | 391 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.002 | 30 | 248 | 151 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GR997483 | 265 | 21 | 285 | 0 |
| CD006560 | 207 | 1 | 207 | 0 |
| JK517244 | 261 | 1 | 261 | 0 |
| DY982615 | 272 | 1 | 272 | 0 |
| CB678856 | 270 | 20 | 289 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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