Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01033359001 |
Family | GH28 |
Protein Properties | Length: 442 Molecular Weight: 47058.6 Isoelectric Point: 4.8642 |
Chromosome | Chromosome/Scaffold: 8 Start: 21222813 End: 21225586 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 99 | 429 | 0 |
EAACSSQGSVLVVPKNNYLLKPITFEGPCKSSITVQIYGTLQASTDRSAYSNDLTRWLVFENVQNLAVQGGGTINGNGKIWWENSCKVDDDLSCKDAPTA LTFYNCKNLVVKNLKIENAQQIHVSFEKCVGVQASGLTVTAPGDSPNTDGIHVTDTQNIQISSSVIGTGDDCISIVSGTQNLQATGITCGPGHGISIGSL GYGNSEALVSDITVNGATLSGTTNGVRIKTWPGGSGSASNIKFQNIEMHDVDNPIIINQKYCDDDKPCESESQAVQVQNVLYQNIKGTSSSSEAIQLDCS SKFPCQGIVLQDIDIETGGGKAATAVCNDAK |
Full Sequence |
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Protein Sequence Length: 442 Download |
MSLQRRFIPF LIVFLLSFPC YYGLQGNPPY DYLDDAYGYA SSQAYDKRPW RKFGSKIMGS 60 KRIGEVGRSL ASVTTVNVND YGAKGDGSDA TEAFKKAWEA ACSSQGSVLV VPKNNYLLKP 120 ITFEGPCKSS ITVQIYGTLQ ASTDRSAYSN DLTRWLVFEN VQNLAVQGGG TINGNGKIWW 180 ENSCKVDDDL SCKDAPTALT FYNCKNLVVK NLKIENAQQI HVSFEKCVGV QASGLTVTAP 240 GDSPNTDGIH VTDTQNIQIS SSVIGTGDDC ISIVSGTQNL QATGITCGPG HGISIGSLGY 300 GNSEALVSDI TVNGATLSGT TNGVRIKTWP GGSGSASNIK FQNIEMHDVD NPIIINQKYC 360 DDDKPCESES QAVQVQNVLY QNIKGTSSSS EAIQLDCSSK FPCQGIVLQD IDIETGGGKA 420 ATAVCNDAKV TEKGDVSPSC T* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-89 | 77 | 425 | 355 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-110 | 71 | 441 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-131 | 102 | 431 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-142 | 78 | 439 | 366 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-162 | 69 | 441 | 378 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN83753.1 | 0 | 1 | 441 | 1 | 441 | hypothetical protein [Vitis vinifera] |
EMBL | CBI29907.1 | 0 | 1 | 441 | 1 | 442 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277214.1 | 0 | 1 | 441 | 48 | 489 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277234.1 | 0 | 1 | 441 | 1 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282772.1 | 0 | 1 | 441 | 1 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-24 | 84 | 394 | 19 | 370 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 9e-22 | 156 | 426 | 89 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 9e-22 | 156 | 426 | 89 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 2e-20 | 164 | 386 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 164 | 386 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |