| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01033364001 |
| Family | GH28 |
| Protein Properties | Length: 443 Molecular Weight: 47248.1 Isoelectric Point: 7.7117 |
| Chromosome | Chromosome/Scaffold: 8 Start: 21197265 End: 21200086 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 99 | 431 | 0 |
| EAACSSQGSVLVVPKNKNYLLKPITFEGPCKSSITVQIYGTVQASADRSAYSNDMTRWLVFENVQNLAVQGGGTINGNGKTWWENSCKVNDDLSCKDAPT ALTFYNCKNLVVKNLKIQNAQQMHVSFEKCVGVQASGLTVTAPGDSPNTDGIHVTDTQNIQISSSVIGTGDDCISIVSGTQNLQATGITCGPGHGISIGS LGSGNSEAHVSDITVNGATLSGTTNGVRIKTWPGGSGSASNIKFQNIEMHNVKNPIIIDQKYCDGDKPCKSQSRAVQVQNVLYQNIKGTSSSSEAIQLDC SDKFPCQGIVLQDIDIEIGGGKAAQAVCNNAKV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 443 Download |
| MSLQRRFIPF LIVFLLSFPC YYGLQGNPPY DYLDDAYAYD SSRAYESWPW RKFGSKIMGS 60 KRIGKVGRSL ASVKTVSVND YGAKGDGSDA TEAFKKAWEA ACSSQGSVLV VPKNKNYLLK 120 PITFEGPCKS SITVQIYGTV QASADRSAYS NDMTRWLVFE NVQNLAVQGG GTINGNGKTW 180 WENSCKVNDD LSCKDAPTAL TFYNCKNLVV KNLKIQNAQQ MHVSFEKCVG VQASGLTVTA 240 PGDSPNTDGI HVTDTQNIQI SSSVIGTGDD CISIVSGTQN LQATGITCGP GHGISIGSLG 300 SGNSEAHVSD ITVNGATLSG TTNGVRIKTW PGGSGSASNI KFQNIEMHNV KNPIIIDQKY 360 CDGDKPCKSQ SRAVQVQNVL YQNIKGTSSS SEAIQLDCSD KFPCQGIVLQ DIDIEIGGGK 420 AAQAVCNNAK VTEKGDVSPS CT* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-83 | 77 | 428 | 357 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-95 | 71 | 442 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-119 | 102 | 432 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-133 | 72 | 440 | 372 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-152 | 69 | 442 | 378 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN64004.1 | 0 | 1 | 442 | 1 | 442 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI29907.1 | 0 | 1 | 442 | 1 | 442 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277214.1 | 0 | 1 | 442 | 48 | 489 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282759.1 | 0 | 1 | 442 | 1 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282772.1 | 0 | 1 | 442 | 1 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-25 | 84 | 395 | 19 | 370 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-21 | 165 | 387 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-21 | 165 | 387 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-21 | 165 | 387 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-21 | 165 | 387 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
